annotCols |
Get annotation columns |
annotCols<- |
Set annotation columns |
annotRows |
Get annotation rows |
annotRows<- |
Set annotation rows |
as.ExpressionSet.matrixData |
Coerces a MatrixData into an ExpressionSet |
as.matrixData.ExpressionSet |
Coerces an ExpressionSet into a MatrixData |
boolParamValue |
Bool parameter value |
create_annotRows |
Create annotation rows |
description |
Get column description |
description<- |
Set column description |
imputeData |
Get imputation of main data frame |
imputeData<- |
Set imputation of main data frame |
infer_perseus_annotation_types |
Infer Perseus type annotation row from DataFrame column classes |
initialize-method |
matrixData initializer |
intParamValue |
Int parameter value |
main |
Get main columns |
main<- |
Set main columns |
matrixData |
matrixData constructor |
matrixData-class |
MatrixData |
MatrixDataCheck |
MatrixDataCheck: a function to check the validity of an object as a perseus data frame |
MatrixDataCheck.default |
MatrixDataCheck: a function to check the validity of an object as a perseus data frame |
MatrixDataCheck.ExpressionSet |
MatrixDataCheck: a function to check the validity of an object as a perseus data frame |
MatrixDataCheck.list |
MatrixDataCheck: a function to check the validity of an object as a perseus data frame |
MatrixDataCheck.matrixData |
MatrixDataCheck: a function to check the validity of an object as a perseus data frame |
names-method |
Get names |
names.matrixData |
Column names of main and annotation columns |
parseParameters |
Parse parameters |
qualityData |
Get quality values of main data frame |
qualityData<- |
Set quality values of main data frame |
read.perseus |
Read Perseus matrix files |
read.perseus.as.ExpressionSet |
Read Perseus matrix files |
read.perseus.as.list |
Read Perseus matrix files |
read.perseus.as.matrixData |
Read Perseus matrix files |
read.perseus.default |
Read Perseus matrix files |
singleChoiceParamInd |
Single choice index |
singleChoiceParamValue |
Single choice value |
write.perseus |
write.perseus: function to generate a perseus-readable text document |
write.perseus.data.frame |
write.perseus: function to generate a perseus-readable text document |
write.perseus.default |
write.perseus: function to generate a perseus-readable text document |
write.perseus.ExpressionSet |
write.perseus: function to generate a perseus-readable text document |
write.perseus.list |
write.perseus: function to generate a perseus-readable text document |
write.perseus.matrix |
write.perseus: function to generate a perseus-readable text document |
write.perseus.matrixData |
write.perseus: function to generate a perseus-readable text document |