barcodes.eval |
Barcodes Evaluation |
barcoding.gap |
Barcoding Gap Calculation |
barcoding.spe.identify |
Species Identification using Protein-coding Barcodes |
barcoding.spe.identify2 |
Species Identification Based on Fuzzy-set Method and kmer |
bbsik |
Bp Barcoding Species Identify using Kmer |
char2NumVector |
Character to Integer Vector |
compare2delimitations |
Comparision between two Delimitations |
consensus.identify |
Consensus Identification |
digitize.DNA |
Digitize DNAbin |
DNAbin2kmerFreqMatrix |
Calculation of Kmer Frequency Matrix from DNAbin for Both Reference and Query Sequences |
FMF |
Fuzzy Membership Function Value |
FMFtheta12 |
Calculate Intraspecific and Interspecific Variation |
NAMES |
Extracts Lables of Samples |
optimize.kmer |
Optimize kmer Length |
pineMothCOI |
pine Moth COI |
pineMothITS1 |
pine Moth ITS1 |
pineMothITS2 |
pine Moth ITS2 |
sample.ref |
Sample Random Datasets from References (DNAbin) |
save.ids |
Save Identifications |
summarize.ref |
Summarize Reference Data |
TDR2 |
TDR2 Species Membership Value |
TibetanMoth |
Tibetan Moth |