add_nodes_attr |
Add attributes to the nodes of a graph |
compute_graph_modul |
Compute modules from a graph by maximising modularity |
compute_node_metric |
Compute graph-theoretic metrics from a graph at the node level |
convert_cd |
Fit a model to convert cost-distances into Euclidean distances |
data_ex_genind |
data_ex_genind genetic dataset |
data_ex_gstud |
data_ex_gstud genetic dataset |
data_ex_loci |
data_ex_loci genetic dataset |
data_simul_genind |
data_simul_genind genetic dataset |
data_tuto |
data_tuto : data used to generate the vignette |
df_to_pw_mat |
Convert an edge-list data.frame into a pairwise matrix |
dist_max_corr |
Compute the distance at which the correlation between genetic distance and landscape distance is maximal |
genepop_to_genind |
Convert a GENEPOP file into a genind object |
genind_to_genepop |
Convert a genind object into a GENEPOP file |
gen_graph_indep |
Create an independence graph of genetic differentiation from genetic data of class genind |
gen_graph_thr |
Create a graph of genetic differentiation using a link weight threshold |
gen_graph_topo |
Create a graph of genetic differentiation with a specific topology |
get_graphab |
Download Graphab if not present on the user's machine |
get_graphab_linkset |
Get linkset computed in the Graphab project |
get_graphab_linkset_cost |
Get cost values associated with a linkset in a Graphab project |
get_graphab_metric |
Get metrics computed at the node in the Graphab project |
get_graphab_raster_codes |
Get unique raster codes from a Graphab project |
graphab_capacity |
Computes custom capacities of patches in the Graphab project |
graphab_corridor |
Computes corridors from least-cost paths already computed in the Graphab project |
graphab_graph |
Create a graph in the Graphab project |
graphab_interpol |
Creates a raster with interpolated connectivity metric values from metrics already computed in the Graphab project |
graphab_link |
Create a link set in the Graphab project |
graphab_metric |
Compute connectivity metrics from a graph in the Graphab project |
graphab_modul |
Create modules from a graph in the Graphab project |
graphab_pointset |
Add a point set to the Graphab project |
graphab_project |
Create a Graphab project |
graphab_project_desc |
Describe the objects of a Graphab project |
graphab_to_igraph |
Create landscape graphs from Graphab link set |
graph_modul_compar |
Compare the partition into modules of two graphs |
graph_node_compar |
Compare the local properties of the nodes from two graphs |
graph_plan |
Create a graph with a minimum planar graph topology |
graph_plot_compar |
Visualize the topological differences between two spatial graphs on a map |
graph_topo_compar |
Compute an index comparing graph topologies |
graph_to_df |
Convert a graph into a edge list data.frame |
graph_to_shp |
Export a spatial graph to shapefile layers |
gstud_to_genind |
Convert a file from 'gstudio' or 'popgraph' into a genind object |
g_percol |
Prune a graph using the 'percolation threshold' method |
kernel_param |
Compute dispersal kernel parameters |
loci_to_genind |
Convert a loci object into a genind object |
mat_cost_dist |
Compute cost distances between points on a raster |
mat_gen_dist |
Compute a pairwise matrix of genetic distances between populations |
mat_geo_dist |
Compute Euclidean geographic distances between points |
plot_graph_lg |
Plot graphs |
plot_w_hist |
Plot histograms of link weights |
pop_gen_index |
Compute population-level genetic indices |
pts_pop_ex |
pts_pop_ex : details on simulated populations |
pts_pop_simul |
pts_pop_simul : details on simulated populations |
pw_mat_to_df |
Convert a pairwise matrix into an edge-list data.frame |
reorder_mat |
Reorder the rows and columns of a symmetric matrix |
scatter_dist |
Plot scatterplots of genetic distance vs landscape distance |
scatter_dist_g |
Plot scatterplots of distances to visualize the graph pruning intensity |
structure_to_genind |
Convert a file in STRUCTURE format into a genind object |