B2721 |
Autotetraploid potato dataset |
breeding_values |
Prediction of QTL-based breeding values from REMIM model |
feim |
Fixed-effect interval mapping (FEIM) |
fit_model |
Fits multiple QTL models |
fit_model2 |
Fits multiple QTL models |
hexafake |
Simulated autohexaploid dataset. |
maps4x |
Autotetraploid potato map |
maps6x |
Simulated autohexaploid map |
modify_qtl |
Modify QTL model |
null_model |
Null model |
null_model2 |
Null model |
optimize_qtl |
Model optimization |
permutations |
Fixed-effect interval mapping (FEIM) model permutations |
pheno4x |
Autotetraploid potato phenotypes |
pheno6x |
Simulated phenotypes |
plot.qtlpoly.bvalues |
Prediction of QTL-based breeding values from REMIM model |
plot.qtlpoly.effects |
QTL allele effect estimation |
plot.qtlpoly.perm |
Fixed-effect interval mapping (FEIM) model permutations |
plot_profile |
Logarithm of _P_-value (LOP) profile plots |
plot_qtl |
QTL heritability and significance plot |
plot_sint |
QTLs with respective support interval plots |
print.qtlpoly.data |
Read genotypic and phenotypic data |
print.qtlpoly.feim |
Fixed-effect interval mapping (FEIM) |
print.qtlpoly.modify |
Modify QTL model |
print.qtlpoly.null |
Null model |
print.qtlpoly.optimize |
Model optimization |
print.qtlpoly.perm |
Fixed-effect interval mapping (FEIM) model permutations |
print.qtlpoly.profile |
QTL profiling |
print.qtlpoly.remim |
Random-effect multiple interval mapping (REMIM) |
print.qtlpoly.search |
QTL forward search |
print.qtlpoly.simul |
Simulations of multiple QTL |
profile_qtl |
QTL profiling |
qtl_effects |
QTL allele effect estimation |
read_data |
Read genotypic and phenotypic data |
read_data2 |
Read genotypic and phenotypic data |
remim |
Random-effect multiple interval mapping (REMIM) |
remim2 |
Random-effect multiple interval mapping (REMIM) |
search_qtl |
QTL forward search |
simulate_qtl |
Simulations of multiple QTL |
summary.qtlpoly.fitted |
Fits multiple QTL models |