SigTree-package |
Determine significantly responsive branches in phylogenetic trees |
adonis.tree |
Function to perform adonis test of independence on p-values from tests of multiple OTUs. |
circularplot2 |
SigTree Other Functions |
edge.colors |
SigTree Other Functions |
export.figtree |
Function to export a 'NEXUS' file that can be opened in 'FigTree' to produce a plot of the phylogenetic tree with branches colored according to significance of families of p-values |
export.inherit |
Function to produce a CSV file with the p-value for each branch as well as a list of all of the tips in each branch's family |
fishers |
SigTree Other Functions |
hartung |
SigTree Other Functions |
index.matrix |
SigTree Other Functions |
node_depthSigTree |
SigTree Other Functions |
node_depth_edgelengthSigTree |
SigTree Other Functions |
node_heightSigTree |
SigTree Other Functions |
node_height_cladoSigTree |
SigTree Other Functions |
num.edges |
SigTree Other Functions |
num.internal.nodes |
SigTree Other Functions |
num.tips |
SigTree Other Functions |
num.total.nodes |
SigTree Other Functions |
p.p2.ADJ.p1 |
SigTree Other Functions |
p2.p1 |
Function to convert two-tailed p-values to one-tailed, for use by other SigTree functions. |
plotphylo2 |
SigTree Other Functions |
plotSigTree |
Function to plot the phylogenetic tree in R with branches (tips) colored according to significance of families of p-values (tips' p-values) |
result |
SigTree Other Functions |
R_init_SigTree |
SigTree Other Functions |
SigTree |
Determine significantly responsive branches in phylogenetic trees |
srt.pvalues |
SigTree Other Functions |
stouffers |
SigTree Other Functions |
tip.colors |
SigTree Other Functions |