gl.assign.grm |
Population assignment using grm |
gl.assign.mahalanobis |
Assign an individual of unknown provenance to population based on Mahalanobis Distance |
gl.assign.pa |
Eliminates populations as possible source populations for an individual of unknown provenance, using private alleles |
gl.assign.pca |
Assign an individual of unknown provenance to population based on PCA |
gl.filter.parent.offspring |
Filters putative parent offspring within a population |
gl.grm |
Calculates an identity by descent matrix |
gl.grm.network |
Represents a genomic relationship matrix (GRM) as a network |
gl.plot.network |
Represents a distance or dissimilarity matrix as a network |
gl.report.parent.offspring |
Identifies putative parent offspring within a population |
gl.run.EMIBD9 |
Run program EMIBD9 |
utils.assignment |
Population assignment probabilities |
utils.assignment_2 |
Population assignment probabilities |
utils.assignment_3 |
Population assignment probabilities |
utils.assignment_4 |
Population assignment probabilities |