driveR-package |
driveR: An R Package for Prioritizing Cancer Driver Genes Using Genomics Data |
create_features_df |
Create Data Frame of Features for Driver Gene Prioritization |
create_gene_level_scna_df |
Create Gene-level SCNA Data Frame |
create_noncoding_impact_score_df |
Create Non-coding Impact Score Data Frame |
create_SCNA_score_df |
Create SCNA Score Data Frame |
determine_double_hit_genes |
Determine Double-Hit Genes |
determine_hotspot_genes |
Determine Hotspot Containing Genes |
driveR |
driveR: An R Package for Prioritizing Cancer Driver Genes Using Genomics Data |
example_cohort_features_table |
Example Cohort-level Features Table for Driver Prioritization |
example_cohort_scna_table |
Example Cohort-level Somatic Copy Number Alteration Table |
example_features_table |
Example Features Table for Driver Prioritization |
example_scna_table |
Example Somatic Copy Number Alteration Table |
KEGG_cancer_pathways_descriptions |
KEGG "Pathways in cancer"-related Pathways - Descriptions |
MTL_submodel_descriptions |
MTL Sub-model Descriptions |
predict_coding_impact |
Create Coding Impact Meta-prediction Score Data Frame |
prioritize_driver_genes |
Prioritize Cancer Driver Genes |
specific_thresholds |
Tumor type specific probability thresholds |