Prioritizing Cancer Driver Genes Using Genomics Data

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Documentation for package ‘driveR’ version 0.4.1

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

driveR-package	driveR: An R Package for Prioritizing Cancer Driver Genes Using Genomics Data
create_features_df	Create Data Frame of Features for Driver Gene Prioritization
create_gene_level_scna_df	Create Gene-level SCNA Data Frame
create_noncoding_impact_score_df	Create Non-coding Impact Score Data Frame
create_SCNA_score_df	Create SCNA Score Data Frame
determine_double_hit_genes	Determine Double-Hit Genes
determine_hotspot_genes	Determine Hotspot Containing Genes
driveR	driveR: An R Package for Prioritizing Cancer Driver Genes Using Genomics Data
example_cohort_features_table	Example Cohort-level Features Table for Driver Prioritization
example_cohort_scna_table	Example Cohort-level Somatic Copy Number Alteration Table
example_features_table	Example Features Table for Driver Prioritization
example_scna_table	Example Somatic Copy Number Alteration Table
KEGG_cancer_pathways_descriptions	KEGG "Pathways in cancer"-related Pathways - Descriptions
MTL_submodel_descriptions	MTL Sub-model Descriptions
predict_coding_impact	Create Coding Impact Meta-prediction Score Data Frame
prioritize_driver_genes	Prioritize Cancer Driver Genes
specific_thresholds	Tumor type specific probability thresholds