Generalized Additive Models for Location Scale and Shape

Documentation for package ‘gamlss’ version 5.4-22

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A B C D E F G H I L M N P Q R S T U V W Z misc

Generalized Additive Models for Location Scale and Shape

-- A --

acfResid	ACF plot of the residuals
add1All	Choose a model by GAIC in a Stepwise Algorithm
add1TGD	A Set of Functions for selecting Models using Validation or Test Data Sets and Cross Validation
additive.fit	Implementing Backfitting in GAMLSS
AIC.gamlss	Gives the GAIC for a GAMLSS Object

-- B --

bfp	Functions to fit fractional polynomials in GAMLSS
bp	Bucket plot

-- C --

calibration	Calibrating centile curves
centiles	Plots the centile curves for a GAMLSS object
centiles.com	Comparing centiles from different GAMLSS models
centiles.fan	Plots the centile curves for a GAMLSS object
centiles.pred	Creating predictive centiles values
centiles.split	Plots centile curves split by x for a GAMLSS object
chooseDist	Fitting Different Parametric 'gamlss.family' Distributions.
chooseDistPred	Fitting Different Parametric 'gamlss.family' Distributions.
coef.gamlss	Extract Model Coefficients in a GAMLSS fitted model
coefAll	Extract Model Coefficients in a GAMLSS fitted model
cs	Specify a Smoothing Cubic Spline Fit in a GAMLSS Formula
cs.control	Specify a Smoothing Cubic Spline Fit in a GAMLSS Formula
CV	A Set of Functions for selecting Models using Validation or Test Data Sets and Cross Validation
cy	P-Splines Fits in a GAMLSS Formula
cy.control	P-Splines Fits in a GAMLSS Formula

-- D --

deviance.gamlss	Global Deviance of a GAMLSS model
devianceIncr	The global deviance increment
drop1All	Choose a model by GAIC in a Stepwise Algorithm
drop1TGD	A Set of Functions for selecting Models using Validation or Test Data Sets and Cross Validation
dtop	Detrended transformed Owen's plot

-- E --

ECDF	Survival function plots for checking the tail behaviour of the data
edf	Effective degrees of freedom from gamlss model
edfAll	Effective degrees of freedom from gamlss model
extractAIC.gamlss	Gives the GAIC for a GAMLSS Object

-- F --

find.hyper	A function to select values of hyper-parameters in a GAMLSS model
findPower	Quantile Sheets
fitDist	Fitting Different Parametric 'gamlss.family' Distributions.
fitDistPred	Fitting Different Parametric 'gamlss.family' Distributions.
fitted.gamlss	Extract Fitted Values For A GAMLSS Model
fittedPlot	Plots The Fitted Values of a GAMLSS Model
formula.gamlss	Extract the Model Formula in a GAMLSS fitted model
fp	Functions to fit fractional polynomials in GAMLSS
fv	Extract Fitted Values For A GAMLSS Model

-- G --

GAIC	Gives the GAIC for a GAMLSS Object
GAIC.scaled	Gives the GAIC for a GAMLSS Object
GAIC.table	Gives the GAIC for a GAMLSS Object
gamlss	Generalized Additive Models for Location Scale and Shape
gamlss.control	Auxiliary for Controlling GAMLSS Fitting
gamlss.cs	Support for Function cs() and scs()
gamlss.cy	Support for Functions for smoothers
gamlss.fp	Support for Function fp()
gamlss.lo	Support for Function lo()
gamlss.pb	Support for Functions for smoothers
gamlss.pbc	Support for Functions for smoothers
gamlss.pbm	Support for Functions for smoothers
gamlss.pbo	Support for Functions for smoothers
gamlss.pbp	Support for Functions for smoothers
gamlss.pbz	Support for Functions for smoothers
gamlss.pcat	Reduction for the Levels of a Factor.
gamlss.pp	Support for Function fp()
gamlss.ps	Support for Functions for smoothers
gamlss.pvc	Support for Functions for smoothers
gamlss.random	Support for Functions random() and re()
gamlss.re	Support for Functions random() and re()
gamlss.ri	Support for Functions for smoothers
gamlss.scope	Generate a Scope Argument for Stepwise GAMLSS
gamlssCV	A Set of Functions for selecting Models using Validation or Test Data Sets and Cross Validation
gamlssML	Maximum Likelihood estimation of a simple GAMLSS model
gamlssMLpred	Maximum Likelihood estimation of a simple GAMLSS model
gamlssNews	Generalized Additive Models for Location Scale and Shape
gamlssVGD	A Set of Functions for selecting Models using Validation or Test Data Sets and Cross Validation
gen.likelihood	A function to generate the likelihood function from a GAMLSS object
get.K	Robust Variance-Covariance matrix of the parameters from a fitted GAMLSS model
get.rqres	Creating and Plotting Randomized Quantile Residuals
getOrder	Fitting Different Parametric 'gamlss.family' Distributions.
getPEF	Getting the partial effect function from a continuous term in a GAMLSS model
getQuantile	Getting the partial quantile function for a term
getSmo	Extracting Smoother information from a GAMLSS fitted object
getTGD	A Set of Functions for selecting Models using Validation or Test Data Sets and Cross Validation
getZmatrix	P-Splines Fits in a GAMLSS Formula
glim.control	Auxiliary for Controlling the inner algorithm in a GAMLSS Fitting

-- H --

histDist	This function plots the histogram and a fitted (GAMLSS family) distribution to a variable
histSmo	Density estimation using the Poisson trick
histSmoC	Density estimation using the Poisson trick
histSmoO	Density estimation using the Poisson trick
histSmoP	Density estimation using the Poisson trick

-- I --

IC	Gives the GAIC for a GAMLSS Object
is.gamlss	Generalized Additive Models for Location Scale and Shape

-- L --

lms	A function to fit LMS curves for centile estimation
lo	Specify a loess fit in a GAMLSS formula
lo.control	Specify a loess fit in a GAMLSS formula
loglogplot	Survival function plots for checking the tail behaviour of the data
loglogplot0	Survival function plots for checking the tail behaviour of the data
loglogSurv	Survival function plots for checking the tail behaviour of the data
loglogSurv1	Survival function plots for checking the tail behaviour of the data
loglogSurv2	Survival function plots for checking the tail behaviour of the data
loglogSurv3	Survival function plots for checking the tail behaviour of the data
logSurv	Survival function plots for checking the tail behaviour of the data
logSurv0	Survival function plots for checking the tail behaviour of the data
lp	Extract Linear Predictor Values and Standard Errors For A GAMLSS Model
lpred	Extract Linear Predictor Values and Standard Errors For A GAMLSS Model
LR.test	Likelihood Ratio test for nested GAMLSS models

-- M --

model.frame.gamlss	Extract a model.frame, a model matrix or terms from a GAMLSS object for a given distributional parameter
model.matrix.gamlss	Extract a model.frame, a model matrix or terms from a GAMLSS object for a given distributional parameter

-- N --

numeric.deriv

An internal GAMLSS function for numerical derivatives

-- P --

par.plot	A function to plot parallel plot for repeated measurement data
pb	P-Splines Fits in a GAMLSS Formula
pb.control	P-Splines Fits in a GAMLSS Formula
pbc	P-Splines Fits in a GAMLSS Formula
pbc.control	P-Splines Fits in a GAMLSS Formula
pbm	P-Splines Fits in a GAMLSS Formula
pbm.control	P-Splines Fits in a GAMLSS Formula
pbo	P-Splines Fits in a GAMLSS Formula
pbo.control	P-Splines Fits in a GAMLSS Formula
pbp	P-Splines Fits in a GAMLSS Formula
pbp.control	P-Splines Fits in a GAMLSS Formula
pbz	P-Splines Fits in a GAMLSS Formula
pbz.control	P-Splines Fits in a GAMLSS Formula
pcat	Reduction for the Levels of a Factor.
pdf.plot	Plots Probability Distribution Functions for GAMLSS Family
plot.gamlss	Plot Residual Diagnostics for an GAMLSS Object
plot.histSmo	A Plotting Function for density estimator object histSmo
plot2way	Function to plot two interaction in a GAMLSS model
plotDF	Reduction for the Levels of a Factor.
plotLambda	Reduction for the Levels of a Factor.
poly.matrix	Auxiliary support for the GAMLSS
polyS	Auxiliary support for the GAMLSS
pp	Functions to fit fractional polynomials in GAMLSS
predict.gamlss	Extract Predictor Values and Standard Errors For New Data In a GAMLSS Model
predictAll	Extract Predictor Values and Standard Errors For New Data In a GAMLSS Model
print.gamlss	Prints a GAMLSS fitted model
prodist.gamlss	Extracting Fitted or Predicted Probability Distributions from gamlss Models
prof.dev	Plotting the Profile Deviance for one of the Parameters in a GAMLSS model
prof.term	Plotting the Profile: deviance or information criterion for one of the terms (or hyper-parameters) in a GAMLSS model
ps	P-Splines Fits in a GAMLSS Formula
pvc	P-Splines Fits in a GAMLSS Formula
pvc.control	P-Splines Fits in a GAMLSS Formula

-- Q --

Q.stats	A function to calculate the Q-statistics
quantSheets	Quantile Sheets
quantSheets.control	Quantile Sheets

-- R --

random	Specify a random intercept model in a GAMLSS formula
re	Specify a random intercept model in a GAMLSS formula
refit	Refit a GAMLSS model
residuals.gamlss	Extract Residuals from GAMLSS model
ri	Specify ridge or lasso Regression within a GAMLSS Formula
rqres.plot	Creating and Plotting Randomized Quantile Residuals
Rsq	Generalised (Pseudo) R-squared for GAMLSS models
rvcov	Robust Variance-Covariance matrix of the parameters from a fitted GAMLSS model

-- S --

scs	Specify a Smoothing Cubic Spline Fit in a GAMLSS Formula
stepGAIC	Choose a model by GAIC in a Stepwise Algorithm
stepGAIC.CH	Choose a model by GAIC in a Stepwise Algorithm
stepGAIC.VR	Choose a model by GAIC in a Stepwise Algorithm
stepGAICAll.A	Choose a model by GAIC in a Stepwise Algorithm
stepGAICAll.B	Choose a model by GAIC in a Stepwise Algorithm
stepTGD	A Set of Functions for selecting Models using Validation or Test Data Sets and Cross Validation
stepTGDAll.A	A Set of Functions for selecting Models using Validation or Test Data Sets and Cross Validation
summary.gamlss	Summarizes a GAMLSS fitted model

-- T --

term.plot	Plot regression terms for a specified parameter of a fitted GAMLSS object
terms.gamlss	Extract a model.frame, a model matrix or terms from a GAMLSS object for a given distributional parameter
TGD	A Set of Functions for selecting Models using Validation or Test Data Sets and Cross Validation

-- U --

update.gamlss

Update and Re-fit a GAMLSS Model

-- V --

VC.test	Vuong and Clarke tests
VGD	A Set of Functions for selecting Models using Validation or Test Data Sets and Cross Validation
vis.lo	Specify a loess fit in a GAMLSS formula

-- W --

Worm plot

-- Z --

z.scores	Z-scores for lms objects
z.scoresQS	Quantile Sheets

-- misc --

.binom	Lists used by GAMLSS
.counts	Lists used by GAMLSS
.gamlss.bi.list	Lists used by GAMLSS
.gamlss.multin.list	Lists used by GAMLSS
.gamlss.sm.list	Lists used by GAMLSS
.hat.WX	P-Splines Fits in a GAMLSS Formula
.real0to1	Lists used by GAMLSS
.realAll	Lists used by GAMLSS
.realline	Lists used by GAMLSS
.realplus	Lists used by GAMLSS