Shiny App. Idiograms with Marks and Karyotype Indices
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Documentation for package ‘idiogramFISH’ version 2.0.13
Help Pages
| allChrSizeSample | Chr. basic data Monocen. |
| allMarksSample | Mark Positional data - monocentrics |
| armRatioCI | FUNCTIONS armRatioCI and swapChrRegionDfSizeAndMarks. |
| asymmetry | FUNCTIONS asymmetry and asymmetryA2. |
| asymmetryA2 | FUNCTIONS asymmetry and asymmetryA2. |
| bigdfChrSizeHolo | Chr. basic data Holo. |
| bigdfMarkPosHolo | Mark Positional data - Holocen. |
| bigdfMarkPosHolo2 | Mark Positional data - Holocen. |
| bigdfOfChrSize | Chr. basic data Monocen. |
| bigdfOfChrSize3Mb | Chr. basic data Holo. |
| bigdfOfMarks | Mark Positional data - monocentrics |
| bigdfOfMarks3Mb | Mark Positional data - Holocen. |
| chrbasicdataHolo | Chr. basic data Holo. |
| chrbasicdatamono | Chr. basic data Monocen. |
| citrusMarkPos | FUNCTIONS: citrusSize, citrusMarkPos, markOverCMA |
| citrusSize | FUNCTIONS: citrusSize, citrusMarkPos, markOverCMA |
| dfAlloParentMarks | Mark Positional data - monocentrics |
| dfAlloParentMarksHolo | Mark Positional data - Holocen. |
| dfChrSizeHolo | Chr. basic data Holo. |
| dfMarkColor | Mark characteristics |
| dfMarkColor5S25S | Mark characteristics |
| dfMarkColorIn | Mark characteristics |
| dfMarkPosHolo | Mark Positional data - Holocen. |
| dfMarkStyle | Mark characteristics |
| dfOfChrSize | Chr. basic data Monocen. |
| dfOfMarks | Mark Positional data - monocentrics |
| dfOfMarks2 | Mark Positional data - monocentrics |
| fillMarkInfo | FUNCTION posCalc and fillMarkInfo |
| fillMarkInfo2 | FUNCTION posCalc and fillMarkInfo |
| genBankReadIF | FUNCTION genBankReadIF |
| humChr | Chr. basic data Monocen. |
| humMarkColor | Mark characteristics |
| humMarkPos | Mark Positional data - monocentrics |
| make.uniqueIF | FUNCTION make.uniqueIF |
| makedfMarkColorMycolors | FUNCTION to make a data.frame of Marks' characterisitcs |
| mapGGChr | FUNCTIONS mapGGChr and mapGGChrMark (for ggplot) |
| mapGGChrMark | FUNCTIONS mapGGChr and mapGGChrMark (for ggplot) |
| markdataholo | Mark Positional data - Holocen. |
| markOverCMA | FUNCTIONS: citrusSize, citrusMarkPos, markOverCMA |
| markposDFs | Mark Positional data - monocentrics |
| mydfMaColor | Mark characteristics |
| namesToColumns | FUNCTION that modifies marks' names into columns |
| parentalAndHybChrSize | Chr. basic data Monocen. |
| parentalAndHybHoloChrSize | Chr. basic data Holo. |
| perMark | FUNCTION perMark |
| plotIdiograms | Plot idiograms of karyotypes/genomes with and without centromere |
| posCalc | FUNCTION posCalc and fillMarkInfo |
| robert | FUNCTION to produce a Robertsonian translocation |
| runBoard | FUNCTION runBoard |
| swapChrRegionDfSizeAndMarks | FUNCTIONS armRatioCI and swapChrRegionDfSizeAndMarks. |
| traspadf | Chr. basic data Monocen. |
| traspaMarks | Mark Positional data - monocentrics |