Auto-Adaptive Parentage Inference Software Tolerant to Missing Parents

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Documentation for package ‘APIS’ version 1.0.1

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allFreq Estimate the allele frequencies
APIS APIS function that assigns with observed data
APIS_dam Example dam genotypes
APIS_offspring Example offspring genotypes
APIS_sire Example sire genotypes
assignmentFortran Assignment function to obtain the average Mendelian transmission probabilities using a Fortran library
assignmentPower calculte the theoretical assignment power
personalThreshold Establish personal threshold
selectParents Select most likely parents for potent parent pairs tests
setThreshold Set the APIS threshold