Auto-Adaptive Parentage Inference Software Tolerant to Missing Parents

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Documentation for package ‘APIS’ version 2.0.4

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APIS_2n APIS for diploids
APIS_3n APIS for triploids
APIS_dam Example dam genotypes
APIS_offspring Example offspring genotypes
APIS_offspring3n Example offspring 3n genotypes
APIS_sire Example sire genotypes
assignment_power Assignment power
import_from_ped Import from Plink .ped
import_from_vcf Import from .vcf
launch_APIShiny Shiny App for interactive session of APIS
plot_delta Plot deltas
plot_mismatches Plot mismatches
plot_probabilities Plot probabilities
simulate_offspring Simulate offspring