Testing and Plotting Procedures for Biostatistics
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Documentation for package ‘RVAideMemoire’ version 0.9-83-7
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A B C D E F G I K L M O P Q R S T U W
| RVAideMemoire-package | Testing and Plotting Procedures for Biostatistics |
-- A --
| adonis.II | Type II permutation MANOVA using distance matrices |
| Anova.clm | Anova Tables for Cumulative Link (Mixed) Models |
| Anova.clmm | Anova Tables for Cumulative Link (Mixed) Models |
-- B --
| back.emmeans | Back-transformation of EMMeans |
| back.lsmeans | Deprecated functions in RVAideMemoire package |
| bootstrap | Bootstrap |
| byf.hist | Histogram for factor levels |
| byf.mqqnorm | QQ-plot for factor levels |
| byf.mshapiro | Shapiro-Wilk test for factor levels |
| byf.normhist | Deprecated functions in RVAideMemoire package |
| byf.qqnorm | QQ-plot for factor levels |
| byf.shapiro | Shapiro-Wilk test for factor levels |
-- C --
| CDA.cv | Cross validation |
| CDA.test | Significance test for CDA |
| cdf.discrete | Cumulative Distribution Function of a known discrete distribution |
| chisq.bin.exp | Expected counts for comparison of response probabilities to given values |
| chisq.bintest | Pearson's Chi-squared test for binary variables |
| chisq.exp | Expected counts for comparison of proportions to given values |
| chisq.multcomp | Pairwise comparisons after a chi-squared goodness-of-fit test |
| chisq.theo.bintest | Pearson's Chi-squared test for comparison of response probabilities to given values |
| chisq.theo.multcomp | Pairwise comparisons after a chi-squared test for given probabilities |
| cochran.qtest | Cochran's Q test |
| cond.multinom | Condition number of the Hessian matrix of a multinomial log-linear model |
| coord.proj | Coordinates of projected points |
| cor.2comp | Comparison of 2 Pearson's linear correlation coefficients |
| cor.conf | Equality of a Pearson's linear correlation coefficient to a given value |
| cor.multcomp | Comparison of several Pearson's linear correlation coefficients |
| cor.sparse | Deprecated functions in RVAideMemoire package |
| cov.test | Significance test for the covariance between two datasets |
| cox.resid | Martingale residuals of a Cox model |
| cramer | Cramer's association coefficient |
| cramer.test | Cramer's association coefficient |
| cv | Coefficient of variation |
| CvM.test | Deprecated functions in RVAideMemoire package |
-- D --
| DA.confusion | Deprecated functions in RVAideMemoire package |
| DA.valid | Deprecated functions in RVAideMemoire package |
| DA.var | Deprecated functions in RVAideMemoire package |
| dendro.gp | Dendrogram and number of groups to be chosen |
| DIABLO.cv | Cross validation |
| DIABLO.test | Significance test based on cross-validation |
| dummy | Dummy responses |
| dunn.test | Deprecated functions in RVAideMemoire package |
-- E --
| elogis | Empirical logistic transformation |
-- F --
| fc.multcomp | Deprecated functions in RVAideMemoire package |
| fisher.bintest | Fisher's exact test for binary variables |
| fisher.multcomp | Pairwise comparisons using Fisher's exact test |
| fp.test | Fligner-Policello test |
| fp.test.default | Fligner-Policello test |
| fp.test.formula | Fligner-Policello test |
| friedman.rating.test | Deprecated functions in RVAideMemoire package |
-- G --
| G.bintest | G-test for binary variables |
| G.multcomp | Pairwise comparisons after a G-test |
| G.test | G-test |
| G.theo.multcomp | Pairwise comparisons after a G-test for given probabilities |
| GPA.test | Significance test for GPA |
-- I --
| ind.contrib | Individual contributions in regression |
-- K --
| kruskal.rating.test | Deprecated functions in RVAideMemoire package |
-- L --
| least.rect | Least rectangles linear regression |
| loc.slp | Slope of a hand-defined line |
| logis.fit | Graphical adujstment of a simple binary logistic regression to data |
| logis.noise | Creating a nls model for logistic regression from fitted values of a glm model |
-- M --
| mod | Mode |
| mood.medtest | Mood's median test |
| mood.medtest.default | Mood's median test |
| mood.medtest.formula | Mood's median test |
| mqqnorm | Multivariate normality QQ-Plot |
| mshapiro.test | Shapiro-Wilk multivariate normality test |
| multinomial.multcomp | Pairwise comparisons after an exact multinomial test |
| multinomial.test | Exact multinomial test |
| multinomial.theo.multcomp | Pairwise comparisons after an exact multinomial test for given probabilities |
| multtest.cor | Univariate correlation test for multiple variables |
| multtest.gp | Univariate comparison of groups for multiple variables |
| multtest.gp.bin | Univariate comparison of groups for multiple binary variables |
| MVA.anova | Type II permutation test for constrained multivariate analyses |
| MVA.biplot | Biplot of multivariate analyses |
| MVA.cmv | Cross model validation |
| MVA.cor | Correlations of multivariate analyses |
| MVA.corplot | Correlation circle of multivariate analyses |
| MVA.cv | Cross validation |
| MVA.load | Loadings of multivariate analyses |
| MVA.loadplot | Loading plot of multivariate analyses |
| MVA.pairplot | Paired plot of multivariate analyses |
| MVA.plot | Plotting of multivariate analyses |
| MVA.scoreplot | Score plot of multivariate analyses |
| MVA.scores | Scores of multivariate analyses |
| MVA.synt | Synthesis quality of multivariate analyses |
| MVA.test | Significance test based on cross (model) validation |
| MVA.trajplot | Trajectory plot of multivariate analyses |
-- O --
| OR.multinom | Odds-ratio (multinomial regression) |
| ord.rw | Re-computation of an ordination using given row weights |
| overdisp.glmer | Estimation of overdispersion with 'glmer' models |
-- P --
| p.beta | Rescaling of a [0,1] variable into the (0,1) interval (and vice-versa) |
| pairwise.CDA.test | Pairwise comparisons for CDA |
| pairwise.factorfit | Pairwise comparisons of groups displayed on a factorial map |
| pairwise.G.test | Pairwise comparisons for proportions using G-tests |
| pairwise.manova | Deprecated functions in RVAideMemoire package |
| pairwise.mood.medtest | Pairwise Mood's median tests |
| pairwise.MVA.test | Pairwise permutation tests based on cross (model) validation |
| pairwise.perm.manova | Pairwise permutation MANOVAs |
| pairwise.perm.t.test | Pairwise permutation t tests |
| pairwise.perm.var.test | Pairwise permutation F tests |
| pairwise.to.groups | Deprecated functions in RVAideMemoire package |
| pairwise.var.test | Pairwise F tests |
| pairwise.wilcox.rating.test | Deprecated functions in RVAideMemoire package |
| pcor | (Semi-)Partial correlation |
| pcor.test | Tests for (semi-)partial association/correlation between paired samples |
| perm.anova | Permutation Analysis of Variance |
| perm.bartlett.test | Permutation Bartlett's test of homogeneity of variances |
| perm.cor.test | Permutation Pearson's correlation test |
| perm.t.test | Permutation Student's t-test |
| perm.t.test.default | Permutation Student's t-test |
| perm.t.test.formula | Permutation Student's t-test |
| perm.var.test | Permutation F test to compare two variances |
| perm.var.test.default | Permutation F test to compare two variances |
| perm.var.test.formula | Permutation F test to compare two variances |
| plot.multtest.cor | Univariate correlation test for multiple variables |
| plot.multtest.gp | Univariate comparison of groups for multiple variables |
| plot.multtest.gp.bin | Univariate comparison of groups for multiple binary variables |
| plot1comp.ind | Deprecated functions in RVAideMemoire package |
| plot1comp.var | Deprecated functions in RVAideMemoire package |
| plotresid | Simple analysis of model residuals |
| plotsurvivors | Survivor curve |
| PLSDA.ncomp | Deprecated functions in RVAideMemoire package |
| PLSDA.test | Deprecated functions in RVAideMemoire package |
| PLSDA.VIP | Variable Importance in the Projection (VIP) |
| predict.CDA.cv | Predict method for cross-validated CDA submodels |
| predict.coadisc | Predict method for CDA |
| predict.MVA.cmv | Predict method for cross-validated submodels |
| predict.MVA.cv | Predict method for cross-validated submodels |
| prop.bin.multcomp | Pairwise comparisons after a test for given probabilities |
| prop.multcomp | Pairwise comparisons after a test for given proportions |
| prop.multinom | Proportions and standard errors |
| prop.multinom.test | Wald tests for comparison of proportions |
-- Q --
| quasibinomial.QAIC | QAIC(c) calculation with GLMs of the quasi- family |
| quasipoisson.QAIC | QAIC(c) calculation with GLMs of the quasi- family |
-- R --
| rating.emmeans | EMMeans for Cumulative Link (Mixed) Models |
| rating.lsmeans | Deprecated functions in RVAideMemoire package |
| rating.prob | Observed rating frequencies |
| reg.ci | Confidence intervals of a simple linear regression |
| RVAideMemoire | Testing and Plotting Procedures for Biostatistics |
-- S --
| s.corcircle2 | Deprecated functions in RVAideMemoire package |
| scat.cr | "Correlation" of variables to axes in MCA or mix analyses |
| scat.mix.categorical | Deprecated functions in RVAideMemoire package |
| scat.mix.numeric | Deprecated functions in RVAideMemoire package |
| scatter.coa2 | Deprecated functions in RVAideMemoire package |
| se | Standard error |
| seq2 | Sequence generation |
| spearman.ci | Confidence interval of a Spearman's rank correlation coefficient |
| spearman.cor.multcomp | Comparison of several Spearman's rank correlation coefficients |
| splitf | Divide into groups respecting relative proportions |
| stand | Standardization of a data frame based on another data frame |
-- T --
| test.multinom | Significance tests of coefficients (multinomial regression) |
| to.dudi | Synthesis quality of multivariate analyses |
-- U --
| user.cont | User defined contrasts for EMMeans |
-- W --
| wald.ptheo.multinom.test | Wald tests for comparison of proportions to theoretical values |
| wald.ptheo.test | Wald test for comparison of a proportion to a theoretical value |
| wilcox.paired.multcomp | Non parametric pairwise comparisons for paired data |
| wilcox.paired.rating.multcomp | Deprecated functions in RVAideMemoire package |
| wilcox.rating.signtest | Deprecated functions in RVAideMemoire package |
| wilcox.rating.test | Deprecated functions in RVAideMemoire package |
| wilcox.signtest | Wilcoxon sign test |
| wilcox.signtest.default | Wilcoxon sign test |
| wilcox.signtest.formula | Wilcoxon sign test |
| wmean | Weighted arithmetic mean |