Automated Analysis of Multiplex Digital PCR Data

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Documentation for package ‘dPCP’ version 2.0.1

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

centers_data	Prediction of clusters centroid position
cmeans_clus	Cluster analysis with fuzzy c-means algorithm
dbscan_combination	Test eps and minPts combinations for DBSCAN analysis
dPCP	Automated analysis of digital PCR data
export_csv	Export dPCP analysis results to a csv file
manual_correction	Manual correction of dPCP cluster analysis
plot.centers_data	Prediction of clusters centroid position
plot.cmeans_clus	Cluster analysis with fuzzy c-means algorithm
plot.dPCP	Automated analysis of digital PCR data
plot.rain_reclus	Identification and clustering of "rain" data
plot.reference_dbscan	Find the empty partitions and single target clusters in the reference sample
rain_reclus	Identification and clustering of "rain" data
read_reference	Read reference files
read_sample	Read sample files
read_sampleTable	Read sample table
reference_dbscan	Find the empty partitions and single target clusters in the reference sample
replicates_quant	Calculation of targets concentration, pooling the sample replicates
report_dPCP	Export dPCP analysis results to a pdf report
target_quant	Calculation of targets concentration.