add_add_var |
Add additional variables to the data |
add_ID_terms |
Add identity effect groups used in a Diversity-Interactions (DI) model to new data |
add_interaction_terms |
Add interaction terms used in a Diversity-Interactions (DI) model to new data |
add_prediction |
Add predictions and confidence interval to data using either a model object or model coefficients |
conditional_ternary |
Conditional ternary diagrams |
conditional_ternary_data |
Conditional ternary diagrams |
conditional_ternary_plot |
Conditional ternary diagrams |
copy_attributes |
Copy attributes from one object to another |
custom_filter |
Special custom filtering for compositional data |
get_colours |
Return colour-blind friendly colours |
get_equi_comms |
Get all equi-proportional communities at specific levels of richness |
get_shades |
Returns shades of colours |
gradient_change |
Visualise change in (predicted) response over diversity gradient |
gradient_change_data |
Calculate change in predicted response over diversity gradient |
gradient_change_plot |
Visualise change in (predicted) response over diversity gradient |
grouped_ternary |
Conditional ternary diagrams at functional group level |
grouped_ternary_data |
Grouped ternary diagrams |
grouped_ternary_plot |
Conditional ternary diagrams at functional group level |
group_prop |
Combine variable proportions into groups |
model_diagnostics |
Regression diagnostics plots with pie-glyphs |
model_selection |
Visualising model selection |
prediction_contributions |
Model term contributions to predicted response |
prediction_contributions_data |
Model term contributions to predicted response |
prediction_contributions_plot |
Visualise model term contributions to predicted response |
prop_to_tern_proj |
Project 3-d compositional data onto x-y plane and vice versa |
simplex_path |
Visualising the change in a response variable between two points in the simplex space |
simplex_path_data |
Creating data for visualising the change in a response variable between two points in the simplex space |
simplex_path_plot |
Visualising the change in a response variable between two points in the simplex space |
ternary_data |
Prepare data for showing contours in ternary diagrams. |
ternary_plot |
Ternary diagrams |
tern_to_prop_proj |
Project 3-d compositional data onto x-y plane and vice versa |
theme_DI |
Default theme for DImodelsVis |
visualise_effects |
Effects plot for compositional data |
visualise_effects_data |
Prepare data for effects plots for compositional data |
visualise_effects_plot |
Effects plot for compositional data |