do_AlluvialPlot |
Generate Alluvial plots. |
do_BarPlot |
Create Bar Plots. |
do_BeeSwarmPlot |
BeeSwarm plot. |
do_BoxPlot |
Generate Box Plots. |
do_CellularStatesPlot |
Cellular States plot. |
do_ChordDiagramPlot |
Generate a Chord diagram. |
do_ColorPalette |
Generate color scales based on a value. |
do_CopyNumberVariantPlot |
Display CNV scores from inferCNV as Feature Plots. |
do_CorrelationPlot |
Create correlation matrix heatmaps. |
do_DimPlot |
Wrapper for DimPlot. |
do_DotPlot |
This function is a wrapper for DotPlot. It provides most of its functionalities while adding extra. You can |
do_EnrichmentHeatmap |
Create enrichment scores heatmaps. |
do_ExpressionHeatmap |
Create heatmaps of averaged expression by groups. |
do_FeaturePlot |
Wrapper for FeaturePlot. |
do_FunctionalAnnotationPlot |
Compute functional annotation plots using GO or KEGG ontologies |
do_GeyserPlot |
Generate a Geyser plot. |
do_GroupedGOTermPlot |
Compute an overview of the GO terms associated with the input list of genes. |
do_GroupwiseDEPlot |
Compute a heatmap with the results of a group-wise DE analysis. |
do_NebulosaPlot |
Wrapper for Nebulosa::plot_density in Seurat. |
do_PathwayActivityPlot |
Plot Pathway Activities from decoupleR using Progeny prior knowledge. |
do_RidgePlot |
Create ridge plots. |
do_TermEnrichmentPlot |
Display the enriched terms for a given list of genes. |
do_TFActivityPlot |
Plot TF Activities from decoupleR using Dorothea prior knowledge. |
do_ViolinPlot |
Wrapper for VlnPlot. |
do_VolcanoPlot |
Compute a Volcano plot out of DE genes. |
human_chr_locations |
Chromosome arm locations for human genome GRCh38. |
package_report |
Generate a status report of SCpubr and its dependencies. |