'anndata' for R


[Up] [Top]

Documentation for package ‘anndata’ version 0.7.5.2

Help Pages

anndata-package anndata - Annotated Data
all.equal.AnnDataR6 Test if two AnnDataR6 objects are equal
all.equal.LayersR6 Test if two LayersR6 objects are equal
AnnData Create an Annotated Data Matrix
anndata anndata - Annotated Data
AnnDataR6 Create an Annotated Data Matrix
as.data.frame.AnnDataR6 AnnData Helpers
as.matrix.AnnDataR6 AnnData Helpers
as.matrix.RawR6 Raw Helpers
concat concat
dim.AnnDataR6 AnnData Helpers
dim.RawR6 Raw Helpers
dimnames.AnnDataR6 AnnData Helpers
dimnames.RawR6 Raw Helpers
install_anndata Install anndata
Layers Create a Layers object
LayersR6 Create a Layers object
length.LayersR6 Layers Helpers
names.collections.abc.Mapping Convert between Python and R objects
names.LayersR6 Layers Helpers
py_to_r.anndata._core.aligned_mapping.Layers Layers Helpers
py_to_r.anndata._core.anndata.AnnData AnnData Helpers
py_to_r.anndata._core.raw.Raw Raw Helpers
py_to_r.collections.abc.KeysView Convert between Python and R objects
py_to_r.collections.abc.Mapping Convert between Python and R objects
py_to_r.collections.abc.Set Convert between Python and R objects
py_to_r.pandas.core.indexes.base.Index Convert between Python and R objects
r-py-conversion Convert between Python and R objects
Raw Create an Annotated Data Matrix
RawR6 Create an Annotated Data Matrix
read_csv read_csv
read_excel read_excel
read_h5ad read_h5ad
read_hdf read_hdf
read_loom read_loom
read_mtx read_mtx
read_text read_text
read_umi_tools read_umi_tools
r_to_py.AnnDataR6 AnnData Helpers
r_to_py.LayersR6 Layers Helpers
r_to_py.RawR6 Raw Helpers
t.AnnDataR6 AnnData Helpers
write_csvs Write annotation to .csv files.
write_h5ad Write .h5ad-formatted hdf5 file.
write_loom Write .loom-formatted hdf5 file.
[.AnnDataR6 AnnData Helpers
[.collections.abc.Mapping Convert between Python and R objects
[.LayersR6 Layers Helpers
[.RawR6 Raw Helpers
[<-.collections.abc.MutableMapping Convert between Python and R objects
[<-.LayersR6 Layers Helpers
[[.collections.abc.Mapping Convert between Python and R objects
[[.LayersR6 Layers Helpers
[[<-.collections.abc.MutableMapping Convert between Python and R objects
[[<-.LayersR6 Layers Helpers