dlpfc151510 |
A human dorsolateral prefrontal cortex data |

DR.SC |
Joint dimension reduction and spatial clustering |

DR.SC.Seurat |
Joint dimension reduction and spatial clustering |

DR.SC_fit |
Joint dimension reduction and spatial clustering |

drscPlot |
tNSE or UMAP plot visualization |

FindSVGs |
Find spatially variable genes |

gendata_RNAExp |
Generate simulated data |

getAdj |
Calculate the adjacency matrix given the spatial coordinates |

getAdj.Seurat |
Calculate the adjacency matrix given the spatial coordinates |

getAdj_auto |
Calculate adjacency matrix by automatically choosing radius |

getAdj_manual |
Calculate adjacency matrix by user-specified radius |

getneighborhood_fast |
getneighborhood_fast |

mbicPlot |
MBIC plot visualization |

read10XVisium |
Read the spatial transcriptomics data measured on 10X Visium platform |

readscRNAseq |
Read the scRNAseq data measured on scRNA sequencing platform |

RunWPCA |
Run Weighted Principal Component Analysis |

selectModel |
Select the number of clusters |

selectModel.drscObject |
Select the number of clusters |

selectModel.Seurat |
Select the number of clusters |

spatialPlotClusters |
Spatial coordinates plot visualization |

sp_means_Rcpp |
Calculate column-wise or row-wise mean |

sp_sums_Rcpp |
Calculate column-wise or row-wise sum |

topSVGs |
Return the top n SVGs |