AIRR Data Representation Reference Library

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Documentation for package ‘airr’ version 1.5.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

$-method	S4 class defining an AIRR standard schema
AIRRSchema	S4 class defining an AIRR standard schema
AlignmentSchema	S4 class defining an AIRR standard schema
DataFileSchema	S4 class defining an AIRR standard schema
ExampleData	Example AIRR data
GenotypeSetSchema	S4 class defining an AIRR standard schema
GermlineSetSchema	S4 class defining an AIRR standard schema
InfoSchema	S4 class defining an AIRR standard schema
load_schema	Load a schema definition
names-method	S4 class defining an AIRR standard schema
read_airr	Read an AIRR Data Model file in YAML or JSON format
read_alignment	Read AIRR tabular data
read_rearrangement	Read AIRR tabular data
read_tabular	Read AIRR tabular data
RearrangementSchema	S4 class defining an AIRR standard schema
RepertoireSchema	S4 class defining an AIRR standard schema
Schema	S4 class defining an AIRR standard schema
Schema-class	S4 class defining an AIRR standard schema
Schema-method	S4 class defining an AIRR standard schema
validate_airr	Validate an AIRR Data Model nested list representation
validate_rearrangement	Validate tabular AIRR data
validate_tabular	Validate tabular AIRR data
write_airr	Write AIRR Data Model records to YAML or JSON files
write_alignment	Write an AIRR tabular data
write_rearrangement	Write an AIRR tabular data
write_tabular	Write an AIRR tabular data
[-method	S4 class defining an AIRR standard schema