intervals-package |
Tools for working with points and intervals |
adjust_closure |
Re-represent integer intervals with open or closed endpoints |
adjust_closure-method |
Re-represent integer intervals with open or closed endpoints |
as.matrix |
Extract matrix of endpoints |
as.matrix-method |
Extract matrix of endpoints |
as.matrix.Intervals_virtual |
Extract matrix of endpoints |
c |
Combine different interval matrix objects |
c.Intervals |
Combine different interval matrix objects |
c.Intervals_full |
Combine different interval matrix objects |
closed |
Class "Intervals_virtual" |
closed-method |
Class "Intervals_virtual" |
closed<- |
Classes "Intervals" and "Intervals_full" |
closed<--method |
Classes "Intervals" and "Intervals_full" |
close_intervals |
Re-represent integer intervals with open or closed endpoints |
close_intervals-method |
Re-represent integer intervals with open or closed endpoints |
clusters |
Identify clusters in a collection of positions or intervals |
clusters-method |
Identify clusters in a collection of positions or intervals |
coerce-method |
Classes "Intervals" and "Intervals_full" |
coerce-method |
Class "Intervals_virtual" |
contract |
Expand or contract intervals |
contract-method |
Expand or contract intervals |
distance_to_nearest |
Compute distance to nearest position in a set of intervals |
distance_to_nearest-method |
Compute distance to nearest position in a set of intervals |
empty |
Identify empty interval rows |
empty-method |
Identify empty interval rows |
expand |
Expand or contract intervals |
expand-method |
Expand or contract intervals |
head-method |
Class "Intervals_virtual" |
initialize-method |
Classes "Intervals" and "Intervals_full" |
initialize-method |
Class "Intervals_virtual" |
Intervals |
Classes "Intervals" and "Intervals_full" |
intervals |
Tools for working with points and intervals |
Intervals-class |
Classes "Intervals" and "Intervals_full" |
Intervals_full |
Classes "Intervals" and "Intervals_full" |
Intervals_full-class |
Classes "Intervals" and "Intervals_full" |
Intervals_virtual-class |
Class "Intervals_virtual" |
Intervals_virtual_or_numeric-class |
Class "Intervals_virtual_or_numeric" |
interval_complement |
Compute the complement of a set of intervals |
interval_complement-method |
Compute the complement of a set of intervals |
interval_difference |
Compute set difference |
interval_difference-method |
Compute set difference |
interval_included |
Assess inclusion of one set of intervals with respect to another |
interval_included-method |
Assess inclusion of one set of intervals with respect to another |
interval_intersection |
Compute the intersection of one or more sets of intervals |
interval_intersection-method |
Compute the intersection of one or more sets of intervals |
interval_overlap |
Assess overlap from one set of intervals to another |
interval_overlap-method |
Assess overlap from one set of intervals to another |
interval_union |
Compute the union of intervals in one or more interval matrices |
interval_union-method |
Compute the union of intervals in one or more interval matrices |
is.na-method |
Class "Intervals_virtual" |
open_intervals |
Re-represent integer intervals with open or closed endpoints |
open_intervals-method |
Re-represent integer intervals with open or closed endpoints |
plot |
Plotting methods for interval objects |
plot-method |
Plotting methods for interval objects |
plot.Intervals |
Plotting methods for interval objects |
plot.Intervals_full |
Plotting methods for interval objects |
reduce |
Compactly re-represent the points in a set of intervals |
reduce-method |
Compactly re-represent the points in a set of intervals |
sgd |
Yeast gene model sample data |
show-method |
Class "Intervals_virtual" |
size |
Compute interval sizes |
size-method |
Compute interval sizes |
split |
Split an intervals object according to a factor |
split-method |
Split an intervals object according to a factor |
split.Intervals_virtual |
Split an intervals object according to a factor |
t-method |
Class "Intervals_virtual" |
tail-method |
Class "Intervals_virtual" |
type |
Class "Intervals_virtual" |
type-method |
Class "Intervals_virtual" |
type<- |
Class "Intervals_virtual" |
type<--method |
Class "Intervals_virtual" |
which_nearest |
Identify nearest member(s) in a set of intervals |
which_nearest-method |
Identify nearest member(s) in a set of intervals |
[-method |
Classes "Intervals" and "Intervals_full" |
[<--method |
Classes "Intervals" and "Intervals_full" |