Tools for Working with Points and Intervals
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Documentation for package ‘intervals’ version 0.15.4
Help Pages
| intervals-package | Tools for working with points and intervals |
| adjust_closure | Re-represent integer intervals with open or closed endpoints |
| adjust_closure-method | Re-represent integer intervals with open or closed endpoints |
| as.matrix | Extract matrix of endpoints |
| as.matrix-method | Extract matrix of endpoints |
| as.matrix.Intervals_virtual | Extract matrix of endpoints |
| c | Combine different interval matrix objects |
| c.Intervals | Combine different interval matrix objects |
| c.Intervals_full | Combine different interval matrix objects |
| closed | Class "Intervals_virtual" |
| closed-method | Class "Intervals_virtual" |
| closed<- | Classes "Intervals" and "Intervals_full" |
| closed<--method | Classes "Intervals" and "Intervals_full" |
| close_intervals | Re-represent integer intervals with open or closed endpoints |
| close_intervals-method | Re-represent integer intervals with open or closed endpoints |
| clusters | Identify clusters in a collection of positions or intervals |
| clusters-method | Identify clusters in a collection of positions or intervals |
| coerce-method | Classes "Intervals" and "Intervals_full" |
| coerce-method | Class "Intervals_virtual" |
| contract | Expand or contract intervals |
| contract-method | Expand or contract intervals |
| distance_to_nearest | Compute distance to nearest position in a set of intervals |
| distance_to_nearest-method | Compute distance to nearest position in a set of intervals |
| empty | Identify empty interval rows |
| empty-method | Identify empty interval rows |
| expand | Expand or contract intervals |
| expand-method | Expand or contract intervals |
| head-method | Class "Intervals_virtual" |
| initialize-method | Classes "Intervals" and "Intervals_full" |
| initialize-method | Class "Intervals_virtual" |
| Intervals | Classes "Intervals" and "Intervals_full" |
| intervals | Tools for working with points and intervals |
| Intervals-class | Classes "Intervals" and "Intervals_full" |
| Intervals_full | Classes "Intervals" and "Intervals_full" |
| Intervals_full-class | Classes "Intervals" and "Intervals_full" |
| Intervals_virtual-class | Class "Intervals_virtual" |
| Intervals_virtual_or_numeric-class | Class "Intervals_virtual_or_numeric" |
| interval_complement | Compute the complement of a set of intervals |
| interval_complement-method | Compute the complement of a set of intervals |
| interval_difference | Compute set difference |
| interval_difference-method | Compute set difference |
| interval_included | Assess inclusion of one set of intervals with respect to another |
| interval_included-method | Assess inclusion of one set of intervals with respect to another |
| interval_intersection | Compute the intersection of one or more sets of intervals |
| interval_intersection-method | Compute the intersection of one or more sets of intervals |
| interval_overlap | Assess overlap from one set of intervals to another |
| interval_overlap-method | Assess overlap from one set of intervals to another |
| interval_union | Compute the union of intervals in one or more interval matrices |
| interval_union-method | Compute the union of intervals in one or more interval matrices |
| is.na-method | Class "Intervals_virtual" |
| open_intervals | Re-represent integer intervals with open or closed endpoints |
| open_intervals-method | Re-represent integer intervals with open or closed endpoints |
| plot | Plotting methods for interval objects |
| plot-method | Plotting methods for interval objects |
| plot.Intervals | Plotting methods for interval objects |
| plot.Intervals_full | Plotting methods for interval objects |
| reduce | Compactly re-represent the points in a set of intervals |
| reduce-method | Compactly re-represent the points in a set of intervals |
| sgd | Yeast gene model sample data |
| show-method | Class "Intervals_virtual" |
| size | Compute interval sizes |
| size-method | Compute interval sizes |
| split | Split an intervals object according to a factor |
| split-method | Split an intervals object according to a factor |
| split.Intervals_virtual | Split an intervals object according to a factor |
| t-method | Class "Intervals_virtual" |
| tail-method | Class "Intervals_virtual" |
| type | Class "Intervals_virtual" |
| type-method | Class "Intervals_virtual" |
| type<- | Class "Intervals_virtual" |
| type<--method | Class "Intervals_virtual" |
| which_nearest | Identify nearest member(s) in a set of intervals |
| which_nearest-method | Identify nearest member(s) in a set of intervals |
| [-method | Classes "Intervals" and "Intervals_full" |
| [<--method | Classes "Intervals" and "Intervals_full" |