BIEN-package |
BIEN: Tools for accessing the BIEN database. |
BIEN |
BIEN: Tools for accessing the BIEN database. |
BIEN_list_all |
Extract a list of all species in the BIEN database. |
BIEN_list_country |
Extract species list by country |
BIEN_list_county |
Extract a species list by county. |
BIEN_list_sf |
Extract a list of species within a given sf polygon. |
BIEN_list_state |
Extract a species list by state/province |
BIEN_metadata_citation |
Generate citations for data extracted from BIEN. |
BIEN_metadata_database_version |
Download the current BIEN database version and release date |
BIEN_metadata_list_political_names |
List political divisions and associated geonames codes. |
BIEN_metadata_match_data |
Check for differing records between old and new dataframes. |
BIEN_occurrence_box |
Extract species occurrence records by a latitude/longitude bounding box. |
BIEN_occurrence_country |
Extract species occurrence records by country. |
BIEN_occurrence_county |
Extract species occurrence records by county. |
BIEN_occurrence_family |
Extract species occurrences by family. |
BIEN_occurrence_genus |
Extract occurrence data from BIEN for specified genera |
BIEN_occurrence_records_per_species |
Count the number of (geoValid) occurrence records for each species in BIEN |
BIEN_occurrence_sf |
Extract occurrence data for specified sf polygon |
BIEN_occurrence_species |
Extract occurrence data for specified species from BIEN |
BIEN_occurrence_state |
Extract species occurrence records by state. |
BIEN_phylogeny_complete |
Download the complete BIEN phylogenies |
BIEN_phylogeny_conservative |
Download the conservative BIEN phylogeny |
BIEN_phylogeny_label_nodes |
Label nodes on a phylogeny |
BIEN_plot_country |
Download plot data from specified countries. |
BIEN_plot_dataset |
Download plot data by dataset. |
BIEN_plot_datasource |
Download plot data from a given datasource. |
BIEN_plot_list_datasource |
List available datasources. |
BIEN_plot_list_sampling_protocols |
List available sampling protocols. |
BIEN_plot_metadata |
Download plot metadata |
BIEN_plot_name |
Download plot data by plot name. |
BIEN_plot_sampling_protocol |
Download plot data using a specified sampling protocol. |
BIEN_plot_sf |
Download plot data from specified sf object. |
BIEN_plot_state |
Download plot data from specified states/provinces. |
BIEN_ranges_box |
Download range maps that intersect a specified bounding box. |
BIEN_ranges_genus |
Download range maps for given genus. |
BIEN_ranges_intersect_species |
Download range maps that intersect the range of a given species. |
BIEN_ranges_list |
List available range maps |
BIEN_ranges_load_species |
Load range maps for specified species. |
BIEN_ranges_sf |
Download range maps that intersect a user-supplied sf object. |
BIEN_ranges_shapefile_to_skinny |
Extract range data and convert to smaller "skinny" format |
BIEN_ranges_skinny_ranges_to_richness_raster |
Build a richness raster from a skinny range file |
BIEN_ranges_species |
Download range maps for given species. |
BIEN_ranges_species_bulk |
Extract range data for large numbers of species |
BIEN_stem_datasource |
Extract stem data for a given datasource from BIEN |
BIEN_stem_family |
Extract stem data for specified families from BIEN |
BIEN_stem_genus |
Extract stem data for specified genera from BIEN |
BIEN_stem_sampling_protocol |
Download stem data using a specified sampling protocol. |
BIEN_stem_species |
Extract stem data for specified species from BIEN |
BIEN_taxonomy_family |
Extract taxonomic information for families |
BIEN_taxonomy_genus |
Extract taxonomic information for genera |
BIEN_taxonomy_species |
Extract taxonomic information for species |
BIEN_trait_country |
Download trait data for given country. |
BIEN_trait_family |
Download trait data for given families. |
BIEN_trait_genus |
Download trait data for given genera. |
BIEN_trait_list |
List all available types of trait data |
BIEN_trait_mean |
Calculates species mean values for a given trait, using Genus or Family level data where Species level data is lacking. |
BIEN_trait_species |
Download trait data for given species. |
BIEN_trait_trait |
Download all measurements of a specific trait(s). |
BIEN_trait_traitbyfamily |
Download trait data for given families and traits. |
BIEN_trait_traitbygenus |
Download trait data for given genus/genera and trait(s). |
BIEN_trait_traitbyspecies |
Download trait data for given species and trait. |
BIEN_trait_traits_per_species |
Count the number of trait observations for each species in the BIEN database |