construct_covmat |
Constructing a covariance matrix for a variable number of phenotypes |
construct_covmat_multi |
Constructing a covariance matrix for multiple phenotypes |
construct_covmat_single |
Constructing a covariance matrix for a single phenotype |
convert_age_to_cir |
Convert age to cumulative incidence rate |
convert_age_to_thresh |
Convert age to threshold |
convert_cir_to_age |
Convert cumulative incidence rate to age |
convert_format |
Attempts to convert the list entry input format to a long format |
convert_liability_to_aoo |
Convert liability to age of onset |
convert_observed_to_liability_scale |
Convert the heritability on the observed scale to that on the liability scale |
correct_positive_definite |
Positive definite matrices |
estimate_gen_liability_ltfh |
Estimate genetic liability similar to LT-FH |
estimate_liability |
Estimating the genetic or full liability for a variable number of phenotypes |
estimate_liability_multi |
Estimating the genetic or full liability for multiple phenotypes |
estimate_liability_single |
Estimating the genetic or full liability |
get_all_combs |
construct all combinations of input vector |
get_kinship |
Construct kinship matrix from graph |
get_relatedness |
Relatedness between a pair of family members |
graph_based_covariance_construction |
Constructing covariance matrix from local family graph |
graph_based_covariance_construction_multi |
Constructing covariance matrix from local family graph for multi trait analysis |
prepare_graph |
Construct graph from register information |
prepare_LTFHPlus_input |
Prepares input for 'estimate_liability' |
rtmvnorm.gibbs |
Gibbs Sampler for the truncated multivariate normal distribution |
simulate_under_LTM |
Simulate under the liability threshold model. |
simulate_under_LTM_multi |
Simulate under the liability threshold model (multiple phenotypes). |
simulate_under_LTM_single |
Simulate under the liability threshold model (single phenotype). |
truncated_normal_cdf |
CDF for truncated normal distribution. |