as.data.frame.complr |
Extract Compositional Data from 'complr' object. |
as.matrix.complr |
Extract Compositional Data from 'complr' object. |
basesub |
Base Pairwise Substitution |
bayes_factor.brmcoda |
Bayes Factors from Marginal Likelihoods |
brmcoda |
Fit Bayesian generalised (non-)linear multilevel compositional model via full Bayesian inference |
bsub |
Between-person Simple Substitution |
bsubmargins |
Between-person Average Substitution |
build.rg |
Reference Grid for 'substitution' model. |
coef |
Model Coefficients |
coef.brmcoda |
Model Coefficients |
compilr |
Indices from a (dataset of) Multilevel Composition(s) (deprecated.) |
complr |
Indices from a (dataset of) Multilevel Composition(s) |
create_substitution |
Constructor function for 'substitution' class. |
diagnostic-quantities-brmcoda |
Extract Diagnostic Quantities from 'brmsfit' Models in 'brmcoda' |
draws-index-brmcoda |
Index 'brmcoda' objects |
fitted |
Expected Values of the Posterior Predictive Distribution |
fitted.brmcoda |
Expected Values of the Posterior Predictive Distribution |
fixef |
Population-Level Estimates |
fixef.brmcoda |
Population-Level Estimates |
get-substitution |
Helper functions used only internally to estimate substitution model |
is.brmcoda |
Checks if argument is a 'brmcoda' object |
is.complr |
Checks if argument is a 'complr' object |
is.substitution |
Checks if argument is a 'substitution' object |
launch_shinystan |
Interface to 'shinystan' |
launch_shinystan.brmcoda |
Interface to 'shinystan' |
log_posterior |
Extract Diagnostic Quantities from 'brmsfit' Models in 'brmcoda' |
log_posterior.brmcoda |
Extract Diagnostic Quantities from 'brmsfit' Models in 'brmcoda' |
loo |
Efficient approximate leave-one-out cross-validation (LOO) |
loo.brmcoda |
Efficient approximate leave-one-out cross-validation (LOO) |
mcmc_plot.brmcoda |
MCMC Plots Implemented in 'bayesplot' |
mcompd |
Multilevel Compositional Data |
mean.complr |
Mean amounts and mean compositions presented in a 'complr' object. |
model.frame.brmcoda |
Extracting the Model Frame from a Formula or Fit from 'brmcoda' object |
multilevelcoda_sim |
multilevelcoda Simulation Study Results |
nchains |
Index 'brmcoda' objects |
nchains.brmcoda |
Index 'brmcoda' objects |
ndraws |
Index 'brmcoda' objects |
ndraws.brmcoda |
Index 'brmcoda' objects |
neff_ratio |
Extract Diagnostic Quantities from 'brmsfit' Models in 'brmcoda' |
neff_ratio.brmcoda |
Extract Diagnostic Quantities from 'brmsfit' Models in 'brmcoda' |
niterations |
Index 'brmcoda' objects |
niterations.brmcoda |
Index 'brmcoda' objects |
nobs.brmcoda |
Extract Number of Observations from 'brmcoda' object |
nuts_params |
Extract Diagnostic Quantities from 'brmsfit' Models in 'brmcoda' |
nuts_params.brmcoda |
Extract Diagnostic Quantities from 'brmsfit' Models in 'brmcoda' |
nvariables |
Index 'brmcoda' objects |
nvariables.brmcoda |
Index 'brmcoda' objects |
pairs.brmcoda |
Create a matrix of output plots from a 'brmcoda"s 'brmsfit' object |
plot.brmcoda |
Trace and Density Plots for MCMC Draws plot |
plot.substitution |
Substitution Plot |
pp_check |
Posterior Predictive Checks for 'brmcoda' Objects |
pp_check.brmcoda |
Posterior Predictive Checks for 'brmcoda' Objects |
predict |
Draws from the Posterior Predictive Distribution |
predict.brmcoda |
Draws from the Posterior Predictive Distribution |
print.brmcoda |
Print a Summary for a fitted 'brmsfit' model in a 'brmcoda' object |
print.complr |
Print a Summary for a 'complr' object |
print.substitution |
Print a Summary for a 'substitution' object |
print.summary.complr |
Summary for a 'complr' object |
prior_summary.brmcoda |
Extract Priors of a 'brmsfit' from a 'brmcoda' object |
psub |
Possible Pairwise Substitutions |
ranef |
Group-Level Estimates |
ranef.brmcoda |
Group-Level Estimates |
residuals.brmcoda |
Posterior Draws of Residuals/Predictive Errors |
rhat |
Extract Diagnostic Quantities from 'brmsfit' Models in 'brmcoda' |
rhat.brmcoda |
Extract Diagnostic Quantities from 'brmsfit' Models in 'brmcoda' |
sbp |
Sequential Binary Partition |
sim |
multilevelcoda Simulation Study results |
sub |
Simple Substitution |
submargins |
Average Substitution |
substitution |
Multilevel Compositional Substitution Analysis |
summary.brmcoda |
Create a Summary of a fitted 'brmsfit' model in a 'brmcoda' object |
summary.complr |
Create a Summary of a 'complr' object |
summary.substitution |
Create a Summary of a Substitution Model represented by a 'substitution' object |
update.brmcoda |
Update 'brmcoda' models |
update.complr |
Update 'complr' |
var.complr |
Variance of compositions presented in a 'complr' object. |
VarCorr |
Extract Variance and Correlation Components |
VarCorr.brmcoda |
Extract Variance and Correlation Components |
variables |
Index 'brmcoda' objects |
variables.brmcoda |
Index 'brmcoda' objects |
vcov.brmcoda |
Covariance and Correlation Matrix of Population-Level Effects |
wsub |
Within-person Simple Substitution |
wsubmargins |
Within-person Average Substitution |