Fine-Scale Population Analysis (Rewrite for Gene-Trait-Environment Interaction Analysis)

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Documentation for package ‘FinePop2’ version 0.4

• DESCRIPTION file.

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FinePop2-package	Fine-Scale Population Analysis (Rewrite for Gene-Trait-Environment Interaction Analysis)
clip.GENEPOP	Remove designated markers from a GENEPOP file.
globalFST	Genome-wide global FST (Weir & Cockerham 1984).
GLS	Generalized least squres for regression analysis considering auto correlation.
herring	An example dataset of Atlantic herring.
jsmackerel	An example dataset of Japanese Spanich mackerel in GENEPOP and frequency format.
locus_specificFST	Locus-specific global FST (Kitada et al. 2007, 2017).
pop_pairwiseFST	Genome-wide poppulation-paiwise FST (Nei & Chesser 1983).
pop_specificFST	Genome-wide population-specific FST (Weir & Goudet 2017).
read.GENEPOP	Create a genotype data object of populations from a GENEPOP format file.