Disk-Based Constrained Change-Point Detection

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Documentation for package ‘PeakSegDisk’ version 2023.11.27

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

ChIPreads	Reads aligned to hg19 from two ChIP-seq experiments
coef.PeakSegFPOP_df	coef PeakSegFPOP df
coef.PeakSegFPOP_dir	coef PeakSegFPOP dir
col.name.list	col name list
fread.first	Quickly read first line
fread.last	Quickly read last line
Mono27ac	A small ChIP-seq data set in which peaks can be found using PeakSegFPOP
PeakSegDisk	PeakSeg penalized solver with caching
PeakSegFPOP_df	PeakSeg penalized solver for data.frame
PeakSegFPOP_dir	PeakSeg penalized solver with caching
PeakSegFPOP_file	PeakSegFPOP using disk storage
PeakSegFPOP_vec	PeakSeg penalized solver for integer vector
plot.PeakSegFPOP_df	plot PeakSegFPOP df
plot.PeakSegFPOP_dir	plot PeakSegFPOP dir
sequentialSearch_dir	Compute PeakSeg model with given number of peaks
summary.PeakSegFPOP_dir	summary PeakSegFPOP dir
wc2int	wc2int
writeBedGraph	Write bedGraph file