ChIPreads |
Reads aligned to hg19 from two ChIP-seq experiments |
coef.PeakSegFPOP_df |
coef PeakSegFPOP df |
coef.PeakSegFPOP_dir |
coef PeakSegFPOP dir |
col.name.list |
col name list |
fread.first |
Quickly read first line |
fread.last |
Quickly read last line |
Mono27ac |
A small ChIP-seq data set in which peaks can be found using PeakSegFPOP |
PeakSegDisk |
PeakSeg penalized solver with caching |
PeakSegFPOP_df |
PeakSeg penalized solver for data.frame |
PeakSegFPOP_dir |
PeakSeg penalized solver with caching |
PeakSegFPOP_file |
PeakSegFPOP using disk storage |
PeakSegFPOP_vec |
PeakSeg penalized solver for integer vector |
plot.PeakSegFPOP_df |
plot PeakSegFPOP df |
plot.PeakSegFPOP_dir |
plot PeakSegFPOP dir |
sequentialSearch_dir |
Compute PeakSeg model with given number of peaks |
summary.PeakSegFPOP_dir |
summary PeakSegFPOP dir |
wc2int |
wc2int |
writeBedGraph |
Write bedGraph file |