Ornstein-Uhlenbeck Models for Phylogenetic Comparative Hypotheses

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Documentation for package ‘ouch’ version 2.20

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

ouch-package	Ornstein-Uhlenbeck methods for comparative phylogenetic hypotheses
anolis.ssd	Greater Antillean anolis lizard sexual size dimorphism data
ape2ouch	Phylogenetic tree object in 'ouch' format
as.data.frame.browntree	Coerce an 'ouch' object to a data frame
as.data.frame.hansentree	Coerce an 'ouch' object to a data frame
as.data.frame.ouchtree	Coerce an 'ouch' object to a data frame
as_data_frame	Coerce an 'ouch' object to a data frame
bimac	Anolis bimaculatus lizard size data
bootstrap	Bootstrapping for uncertainty quantification
bootstrap-method	Bootstrapping for uncertainty quantification
brown	Phylogenetic Brownian motion models
browntree-class	Phylogenetic Brownian motion models
coef	Model coefficients
coef-method	Model coefficients
geospiza	Data on Darwin's finches
hansen	Ornstein-Uhlenbeck models of trait evolution
hansentree-class	Ornstein-Uhlenbeck models of trait evolution
logLik	Log likelihood of a fitted model
logLik-method	Log likelihood of a fitted model
ouch	Ornstein-Uhlenbeck methods for comparative phylogenetic hypotheses
ouch,package	Ornstein-Uhlenbeck methods for comparative phylogenetic hypotheses
ouchtree	Phylogenetic tree object in 'ouch' format
ouchtree-class	Phylogenetic tree object in 'ouch' format
paint	Painting regimes on a phylogenetic tree
plot	'ouch' plotting functions
plot-method	'ouch' plotting functions
simulate	Simulations of a phylogenetic trait model
simulate-method	Simulations of a phylogenetic trait model
summary	Summary methods
summary-method	Summary methods
update	Update and refit an 'ouch' model
update-method	Update and refit an 'ouch' model