simmr-package |
simmr: A package for fitting stable isotope mixing models via JAGS and FFVB in R |
combine_sources |
Combine the dietary proportions from two food sources after running simmr |
compare_groups |
Compare dietary proportions for a single source across different groups |
compare_sources |
Compare dietary proportions between multiple sources |
geese_data |
Geese stable isotope mixing data set |
geese_data_day1 |
A smaller version of the Geese stable isotope mixing data set |
plot.simmr_input |
Plot the 'simmr_input' data created from 'simmr_load' |
plot.simmr_output |
Plot different features of an object created from 'simmr_mcmc' or 'simmr_ffvb'. |
posterior_predictive |
Plot the posterior predictive distribution for a simmr run |
print.simmr_input |
Print simmr input object |
print.simmr_output |
Print simmr output object |
prior_viz |
Plot the prior distribution for a simmr run |
simmr |
simmr: A package for fitting stable isotope mixing models via JAGS and FFVB in R |
simmr_data_1 |
A simple fake stable isotope mixing data set |
simmr_data_2 |
A 3-isotope fake stable isotope mixing data set |
simmr_elicit |
Function to allow informative prior distribution to be included in simmr |
simmr_ffvb |
Run a 'simmr_input' object through the Fixed Form Variational Bayes(FFVB) function |
simmr_load |
Function to load in simmr data and check for errors |
simmr_mcmc |
Run a 'simmr_input' object through the main simmr Markov chain Monte Carlo (MCMC) function |
square_data |
An artificial data set used to indicate effect of priors |
summary.simmr_output |
Summarises the output created with 'simmr_mcmc' or 'simmr_ffvb' |