Computation of Ancestry Scores with Mixed Families and Unrelated Individuals

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Documentation for package ‘PCFAM’ version 1.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

PCFAM-package	Computation of ancestry scores with mixed families and unrelated individuals
colcenter	column centering of the data matrix
cov.function	Sample covariance calculator
familyave	Family average approach
fastcov	Fast covariance function
findfamilies	Find families
gr.pca	The geometric rotation approach
ms.pca	The matrix substitution approach
mysqrtm	Matrix square root function
PCFAM	Computation of ancestry scores with mixed families and unrelated individuals
perfectwhiten	The covariance preserving whitening function.
residualize	Residualization and scale of the original genotype data
rowcol	Indicators for of the row and column of the original matrix
rowscale	Scale each row of a matrix