| ggroups-package |
Pedigree and genetic groups |
| buildA |
Relationship matrix *A* |
| buildD |
Relationship matrix *D* |
| gghead |
Append genetic groups to the pedigree |
| inb |
Individual's inbreeding coefficient |
| inbreed |
Inbreeding coefficients |
| mat2tab |
Matrix to tabular |
| offspring |
Descendants of an individual per generation |
| pedcheck |
Basic pedigree checks |
| peddown |
Downward pedigree extraction |
| pedup |
Upward pedigree extraction |
| pruneped |
Pedigree pruning |
| Qgpu |
Vector *Qg* + *u* |
| qmat |
Matrix *Q* |
| qmatL |
Matrix *Q* for large pedigrees |
| qmatXL |
Matrix *Q* for large pedigrees (parallel processing) |
| renum |
Pedigree renumbering |
| rg |
Genetic relationship coefficient |
| smgsped |
Sire-maternal grandsire (S-MGS) pedigree |
| tab2mat |
Tabular to matrix |
| tabA |
Relationship matrix *A* in a tabular format |
| tabAinv |
Inverse of the relationship matrix *A* in a tabular format |
| tabD |
Dominance relationship matrix *D* in a tabular-sparse format |
| tabDinv |
Inverse of the dominance relationship matrix *D* in a tabular format |
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