Microbiome Regression-Based Kernel Association Tests

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Documentation for package ‘MiRKAT’ version 1.2.3

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

bindata	Simulated DEPENDENT data with BINOMIAL traits for correlated regression-based analysis (i.e. CSKAT, GLMMMiRKAT)
CSKAT	Small-sample SKAT for correlated (continuous) data ('c' stands for 'correlated'). Called within GLMM-MiRKAT.
D2K	D2K
GLMMMiRKAT	The Microbiome Regression-based Kernel Association Test Based on the Generalized Linear Mixed Model
inner.CSKAT	Inner Function for CSKAT, Correlated Sequence Kernel Association Test
inner.KRV	Kernel RV Coefficient Test; Inner Function
KRV	Kernel RV Coefficient Test (KRV)
MiRKAT	Microbiome Regression-based Kernel Association Test
MiRKAT.iQ	MiRKAT-iQ
MiRKAT.Q	Robust MiRKAT (quantile regression)
MiRKAT.R	Robust MiRKAT (robust regression)
MiRKATS	Microiome Regression-based Kernel Association Test for Survival
MiRKAT_binary	Microbiome Regression-Based Kernel Association Test for binary outcomes
MiRKAT_continuous	Microbiome Regression-based Analysis Test for a continuous outcome variable
MMiRKAT	Multivariate Microbiome Regression-based Kernel Association Test
nordata	Simulated DEPENDENT data with GAUSSIAN traits for correlated regression-based analysis (i.e. CSKAT, GLMMMiRKAT)
poisdata	Simulated DEPENDENT data with POISSON (count) traits for correlated regression-based analysis (i.e. CSKAT, GLMMMiRKAT)
throat.meta	Simulated metadata for microbiome regression-based analysis
throat.otu.tab	Simulated OTU data for microbiome regression analysis
throat.tree	Simulated rooted phylogenetic tree