Collocation Inference for Dynamic Systems

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Documentation for package ‘CollocInfer’ version 1.0.4

• DESCRIPTION file.
• Code demos. Use demo() to run them.
• Package NEWS.

Help Pages

CollocInfer-package	Collocation Inference in R
chemo.fun	Transfer Functions
ChemoData	Chemostat Example Data
ChemoParnames	Chemostat Example Data
ChemoPars	Chemostat Example Data
ChemoRMData	Rosenzweig-MacArthur Model Applied to Chemostat Data
ChemoRMPars	Rosenzweig-MacArthur Model Applied to Chemostat Data
ChemoRMTime	Rosenzweig-MacArthur Model Applied to Chemostat Data
ChemoTime	Chemostat Example Data
ChemoVarnames	Chemostat Example Data
CollocInfer	Collocation Inference in R
CollocInferPlots	Diagnostic PLots for CollocInfer
FhNdata	FitzHugh-Nagumo data
FhNestCoefs	Estimated Parameters for FitzHugh-Nagumo data
FhNestPars	Estimated Parameters for FitzHugh-Nagumo data
FhNparnames	FitzHugh-Nagumo data
FhNpars	FitzHugh-Nagumo data
FhNtimes	FitzHugh-Nagumo data
FhNvarnames	FitzHugh-Nagumo data
FitMatchDC	Estimating Hidden States
FitMatchDC2	Estimating Hidden States
FitMatchErr	Estimating Hidden States
FitMatchList	Estimating Hidden States
FitMatchOpt	Estimating Hidden States
forward.prediction.error	forward.prediction.error
inneropt	Inner Optimization Functions
IntegrateForward	IntegrateForward
LS.setup	Setup Functions for proc and lik objects
make.Cproc	Process Distributions
make.cvar	Variance Functions
make.diagnostics	Transfer Functions
make.Dproc	Process Distributions
make.exp	Transfer Functions
make.exp.Cproc	Log Transforms
make.exp.Dproc	Log Transforms
make.exptrans	Transfer Functions
make.fhn	Transfer Functions
make.findif	Finite Difference Functions
make.findif.loglik	Finite Difference Functions
make.findif.ode	Finite Difference Functions
make.findif.var	Finite Difference Functions
make.genlin	Transfer Functions
make.Henon	Transfer Functions
make.id	Transfer Functions
make.lik	Observation Process Distribution Function
make.logstate.lik	Log Transforms
make.logtrans	Log Transforms
make.multinorm	Observation Process Distribution Function
make.NS	Transfer Functions
make.SEIR	Transfer Functions
make.SSElik	Observation Process Distribution Function
make.SSEproc	Process Distributions
make.transfer	Transfer Functions
make.var.SEIR	Variance Functions
make.variance	Variance Functions
multinorm.setup	Setup Functions for proc and lik objects
NSgroundwater	North Shore data
NSrainfall	North Shore data
NStimes	North Shore data
outeropt	Outer Optimization Functions
ParsMatchDP	Estimate of Parameters from Smooth
ParsMatchErr	Estimate of Parameters from Smooth
ParsMatchList	Estimate of Parameters from Smooth
ParsMatchOpt	Estimate of Parameters from Smooth
pomp.dmeasure	Observation Process Distribution Function
pomp.skeleton	Transfer Functions
Profile.covariance	Profile.covariance
Profile.GausNewt	Profile Estimation with Collocation Inference
Profile.LS	Profile Estimation Functions
Profile.multinorm	Profile Estimation Functions
ProfileDP	Profile Estimation with Collocation Inference
ProfileErr	Profile Estimation with Collocation Inference
ProfileList	Profile Estimation with Collocation Inference
ProfileSSE	Profile Estimation with Collocation Inference
RMparnames	Rosenzweig-MacArthur Model Applied to Chemostat Data
RMvarnames	Rosenzweig-MacArthur Model Applied to Chemostat Data
SEIRdata	SEIR data
SEIRparnames	SEIR data
SEIRpars	SEIR data
SEIRtimes	SEIR data
SEIRvarnames	SEIR data
setup	Setup Functions for proc and lik objects
Smooth.LS	Model-Based Smoothing Functions
Smooth.multinorm	Model-Based Smoothing Functions
SplineCoefsDC	Spline Estimation Functions
SplineCoefsDC2	Spline Estimation Functions
SplineCoefsDCDP	Spline Estimation Functions
SplineCoefsDP	Spline Estimation Functions
SplineCoefsErr	Spline Estimation Functions
SplineCoefsList	Spline Estimation Functions
SplineEst.NewtRaph	Spline Estimation Functions