Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours


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Documentation for package ‘imsig’ version 1.1.3

Help Pages

corr_matrix Correlation matrix
example_cli Example clinical data file for survival analysis with ImSig
example_data Example transcriptomics data
feature_select Feature selection of signature genes
gene_stat General stastitics of ImSig analysis
imsig Estimate the relative abundance of tissue-infiltrating immune subpopulations abundances using gene expression data
imsig_survival Survival analysis based on relative abundance of immune infiltration estimated by ImSig
plot_abundance Plot relative abundance of immune cells
plot_network Network graph of ImSig genes
plot_survival Forest plot of survial analysis by ImSig
pp_exp Pre-processing expression matrix
pp_sig Pre-processing ImSig file
sig ImSig genes