apply.scaling |
Apply scaling factors |
calculate.cis.matrix |
Calculate consensus integrative correlation matrix |
calculate.integrative.similarity.matrix |
Calculate integrative similarity matrix |
calculate.scaling |
Calculate scaling factors |
cluster.patients |
Clustering to find patient subtypes |
combine.integrative.features |
Combine iSubGen integrative features |
create.autoencoder |
Create an autoencoder for dimensionality reduction |
create.autoencoder.irf.matrix |
Create matrix of independent reduced features |
load.molecular.aberration.data |
Load molecular aberration data |
read.scaling.factors |
Read scaling factors from file |
write.scaling.factors |
Write scaling factors to file |