Integrative Subtype Generation

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Documentation for package ‘iSubGen’ version 1.0.1

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

apply.scaling	Apply scaling factors
calculate.cis.matrix	Calculate consensus integrative correlation matrix
calculate.integrative.similarity.matrix	Calculate integrative similarity matrix
calculate.scaling	Calculate scaling factors
cluster.patients	Clustering to find patient subtypes
combine.integrative.features	Combine iSubGen integrative features
create.autoencoder	Create an autoencoder for dimensionality reduction
create.autoencoder.irf.matrix	Create matrix of independent reduced features
load.molecular.aberration.data	Load molecular aberration data
read.scaling.factors	Read scaling factors from file
write.scaling.factors	Write scaling factors to file