Hierarchical Joint Analysis of Marginal Summary Statistics

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Documentation for package ‘hJAM’ version 1.0.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

betas.Gy	Example beta list of hJAM
conditional_A	Example conditional A matrix of hJAM
get_cond_A	Compute conditional Z matrix
get_cond_alpha	Compute conditional alphas
Gl	Example reference data of hJAM
hJAM_egger	Fit hJAM with Egger regression
hJAM_lnreg	Fit hJAM with linear regression
marginal_A	Example marginal A matrix of hJAM
output.format	Keep the output as three digits
print.hJAM_egger	Print out for hJAM_egger
print.hJAM_lnreg	Print out for hJAM_lnreg
SNPs_heatmap	Heatmap for all the SNPs used in the analysis
SNPs_info	Example SNPs' information of hJAM
SNPs_scatter_plot	Scatter plot for all the SNPs used in the analysis