Optimal Partitioning of Similarity Relations

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Documentation for package ‘optpart’ version 3.0-3

• DESCRIPTION file.

Help Pages

archi	Archipelago Analysis
bestfit	Identify the Goodness-of-Fit of Cluster Members
bestopt	Best Of Set Optimal Partitions From Random Starts
classmatch	Classification Matching and Differencing
clique	Maximal Clique Analysis
clique.test	Clique Test
clustering	Clustering Object
compare	Compare Species Constancy for Specified Clusters
confus	(Fuzzy) Confusion Matrix
consider	Recommendations for Possible Merging of Clusters
disdiam	Dissimilarity Diameters of a Partition
disdiam.default	Dissimilarity Diameters of a Partition
disdiam.stride	Dissimilarity Diameters of a Partition
extract	Extract A Specific Cluster Solution From A Stride
extract.stride	Extract A Specific Cluster Solution From A Stride
flexbeta	Calculate a Flexible-Beta Dendrogram
fuzconfus	(Fuzzy) Confusion Matrix
gensilwidth	Generalized Silhouette Width
getsets	Maximally Similar Sets Analysis
getsets.mss	Maximally Similar Sets Analysis
lambda	Goodman- Kruskal Lambda Index of Classification Association
maxpact	Maximally Similar Sets Analysis
maxsimset	Maximally Similar Sets Analysis
mergeclust	Merge Specified Clusters in a Classification
mss.test	Maximally Similar Sets Analysis
murdoch	Indicator Species Analysis by Murdoch Preference Function
neighbor	Neighbor Analysis of Partitions
optimclass	Optimum Classification by Counts of Indicator Species
optindval	Optimizing Classification by Maximizing Dufrene and Legendre's Indicator Value
optpart	Optimal Partitioning of Dissimilarity/Distance Matrices
optpart.clustering	Optimal Partitioning of Dissimilarity/Distance Matrices
optpart.default	Optimal Partitioning of Dissimilarity/Distance Matrices
optpart.partana	Optimal Partitioning of Dissimilarity/Distance Matrices
optpart.partition	Optimal Partitioning of Dissimilarity/Distance Matrices
optpart.stride	Optimal Partitioning of Dissimilarity/Distance Matrices
optsil	Clustering by Optimizing Silhouette Widths
optsil.clustering	Clustering by Optimizing Silhouette Widths
optsil.default	Clustering by Optimizing Silhouette Widths
optsil.partana	Clustering by Optimizing Silhouette Widths
optsil.partition	Clustering by Optimizing Silhouette Widths
optsil.stride	Clustering by Optimizing Silhouette Widths
opttdev	Optimizing Classification by Minimizing Table Deviance
partana	Partition Analysis
partana.clustering	Partition Analysis
partana.default	Partition Analysis
partana.partition	Partition Analysis
partana.stride	Partition Analysis
partition	Convert Object to Partition Object
partition.clustering	Convert Object to Partition Object
partition.partana	Convert Object to Partition Object
phi	Calculating the phi Statistic on Taxon Classifications
plot.clique	Maximal Clique Analysis
plot.mss	Maximally Similar Sets Analysis
plot.murdoch	Indicator Species Analysis by Murdoch Preference Function
plot.partana	Partition Analysis
plot.stride	Stride: Producing a Sequence of Clusterings
print.disdiam	Dissimilarity Diameters of a Partition
print.murdoch	Indicator Species Analysis by Murdoch Preference Function
refine	Refining a Classification by Re-Assigning Memberships
refine.default	Refining a Classification by Re-Assigning Memberships
refine.dsvord	Refining a Classification by Re-Assigning Memberships
refine.nmds	Refining a Classification by Re-Assigning Memberships
refine.pco	Refining a Classification by Re-Assigning Memberships
reordclust	Re-order Clusters in a Classification
shoshsite	Site Data for the Shoshone National Forest, Wyoming, USA
shoshveg	Vascular Plant Species Cover for the Shoshone National Forest, Wyoming, USA
silhouette.clustering	Produce a Silhouette Object From a Partana, Clustering, or Stride Object
silhouette.partana	Produce a Silhouette Object From a Partana, Clustering, or Stride Object
silhouette.stride	Produce a Silhouette Object From a Partana, Clustering, or Stride Object
slice	Slice a Hierarchical Clustering Dendrogram with a Mouse
stride	Stride: Producing a Sequence of Clusterings
summary.clique	Maximal Clique Analysis
summary.murdoch	Indicator Species Analysis by Murdoch Preference Function
summary.partana	Partition Analysis
summary.tabdev	Classification Validity Assessment by Table Deviance
tabdev	Classification Validity Assessment by Table Deviance
tabdev.default	Classification Validity Assessment by Table Deviance
tabdev.stride	Classification Validity Assessment by Table Deviance
testpart	Identify Misclassified Plots in a Partition
testsil	Produce a Silhouette Object From a Partana, Clustering, or Stride Object
typal	Identification of Typal Samples in a Partition