add_property |
Add or Merge Properties for RCSB PDB Data Fetching |
autoresolve_sequence_type |
Automatically Determine the Sequence Type |
ChemicalOperator |
Chemical Operator for SMILES/InChI Searches |
ComparisonOperator |
Create a Comparison Search Operator |
ContainsPhraseOperator |
Create a Contains Phrase Search Operator |
ContainsWordsOperator |
Create a Contains Words Search Operator |
data_fetcher |
Fetch RCSB PDB Data Based on Specified Criteria |
DefaultOperator |
Create a Default Search Operator |
describe_chemical |
Describe Chemical Compound from RCSB PDB |
ExactMatchOperator |
Create an Exact Match Search Operator |
ExistsOperator |
Create an Existence Search Operator |
FastaSequence |
Create a FASTA Sequence Data Structure |
fetch_data |
Fetch Data from RCSB PDB Using a JSON Query |
find_papers |
Search for and Retrieve Paper Titles from PDB |
find_results |
Retrieve Specific Fields for Search Results from RCSB PDB |
generate_json_query |
Generate a JSON Query for RCSB PDB Data Retrieval |
get_fasta_from_rcsb_entry |
Retrieve FASTA Sequences from PDB Entry |
get_info |
Retrieve Information for a Given PDB ID |
get_pdb_file |
Download PDB Files from RCSB Database |
infer_search_service |
Infer the Appropriate Search Service |
InOperator |
Create an Inclusion Search Operator |
parse_fasta_text_to_list |
Parse Raw FASTA Text into a List of Sequences |
perform_search |
Perform a Search in the RCSB PDB |
QueryGroup |
Create a Grouped Query Object |
QueryNode |
Create a Query Node Object |
query_search |
Search Query Function |
RangeOperator |
Create a Range Search Operator |
RequestOptions |
Define Options for Search Requests |
return_data_as_dataframe |
Transform Response Data into a Dataframe |
ScoredResult |
Create a Scored Result Object |
search_graphql |
Perform a GraphQL Query to RCSB PDB |
SeqMotifOperator |
Create a Sequence Motif Operator for Searches |
SequenceOperator |
Create a Sequence Operator for Sequence-Based Searches |
StructureOperator |
Create a Structure Operator for Structure-Based Searches |
walk_nested_dict |
Recursively Walk Through a Nested Dictionary |