Utilities for Interacting with the 'CTX' APIs
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Documentation for package ‘ctxR’ version 1.0.0
Help Pages
-- B --
| bioactivity_api_server | Bioactivity API Server url |
-- C --
| chemical_api_server | Chemical API Server url |
| chemical_contains | Chemical contains |
| chemical_contains_batch | Chemical contains batch search |
| chemical_equal | Chemical equal |
| chemical_equal_batch | Chemical equal batch search |
| chemical_starts_with | Chemical starts with |
| chemical_starts_with_batch | Chemical starts with batch search |
| create_data.table_chemical_details | Create chemical details data.table helper function |
| ctxR_hide_api_key | Register CTX API Key for ctxR |
| ctxR_options | ctxR Options |
| ctxR_show_api_key | Register CTX API Key for ctxR |
| ctx_key | Register CTX API Key for ctxR |
-- E --
| exposure_api_server | Exposure API Server url |
-- G --
| get_all_assays | Retrieve all assays |
| get_all_public_chemical_lists | Get all public chemical lists |
| get_annotation_by_aeid | Retrieve annotations for AEID |
| get_annotation_by_aeid_batch | Retrieve annotations for AEID batch |
| get_bioactivity_details | Retrieve bioactivity data from DTXSID, AEID, SPID, or m4id |
| get_bioactivity_details_batch | Retrieve bioactivity data from DTXSID or AEID batch |
| get_bioactivity_endpoint_status | Bioactivity API Endpoint status |
| get_bioactivity_summary | Retrieve bioactivity summary for AEID |
| get_bioactivity_summary_batch | Retrieve bioactivity summary data from AEID batch |
| get_cancer_hazard | Get cancer hazard |
| get_cancer_hazard_batch | Get cancer hazard batch |
| get_cancer_hazard_batch_old | Get cancer hazard batch |
| get_chemicals_in_list | Get chemicals in a given chemical list |
| get_chemicals_in_list_batch | Get chemicals in a given chemical list batch |
| get_chemical_by_property_range | Get chemicals by property and its value range |
| get_chemical_by_property_range_batch | Retrieve chemicals by property and value range in batch search |
| get_chemical_details | Retrieve chemical details from DTXSID of DTXCID |
| get_chemical_details_batch | Retrieve chemical details from DTXSID of DTXCID in batch search |
| get_chemical_endpoint_status | Chemical API Endpoint status |
| get_chemical_image | Get image file by DTXSID or DTXCID |
| get_chemical_image_batch | Get image file by DTXSID or DTXCID batch |
| get_chemical_lists_by_type | Get chemical lists by type |
| get_chemical_lists_by_type_batch | Get chemical lists by type batch search |
| get_chemical_mol | Get mol file by DTXSID or DTXCID |
| get_chemical_mol_batch | Get mol file by DTXSID or DTXCID batch |
| get_chemical_mrv | Get mrv file by DTXSID or DTXCID |
| get_chemical_mrv_batch | Ger mrv file by DTXSID or DTXCID batch |
| get_chemical_synonym | Get chemical synonym |
| get_chemical_synonym_batch | Get chemical synonym batch |
| get_chem_info | Retrieve chemical information |
| get_chem_info_batch | Retrieve chemical information in batch search |
| get_chem_info_batch_old | Retrieve chemical information in batch search |
| get_ecotox_hazard_by_dtxsid | Get ecotox hazard data by DTXSID |
| get_ecotox_hazard_by_dtxsid_batch | Get ecotox hazard data by DTXSID batch |
| get_ecotox_hazard_by_dtxsid_batch_old | Get ecotox hazard data by DTXSID batch |
| get_exposure_endpoint_status | Exposure API Endpoint status |
| get_exposure_functional_use | Retrieve exposure related functional use data |
| get_exposure_functional_use_batch | Retrieve exposure related functional use data batch |
| get_exposure_functional_use_category | Retrieve functional use categories |
| get_exposure_functional_use_probability | Retrieve probability of exposure for functional use category |
| get_exposure_functional_use_probability_batch | Retrieve exposure functional use probability data batch |
| get_exposure_list_presence_tags | Retrieve list presence tags |
| get_exposure_list_presence_tags_by_dtxsid | Retrieve document data and list presence tags for a chemical |
| get_exposure_list_presence_tags_by_dtxsid_batch | Retrieve document data and list presence tags for chemicals batch |
| get_exposure_product_data | Retrieve product data for exposure purposes |
| get_exposure_product_data_batch | Retrieve product data for exposure purposes batch |
| get_exposure_product_data_puc | Retrieve product use categories related to exposure |
| get_fate_by_dtxsid | Get fate by DTXSID |
| get_fate_by_dtxsid_batch | Retrieve chemical fate data in batch search |
| get_fate_by_dtxsid_batch_old | Retrieve chemical fate data in batch search |
| get_genetox_details | Get genetox details |
| get_genetox_details_batch | Get genetox details batch |
| get_genetox_details_batch_old | Get genetox details batch |
| get_genetox_summary | Get genetox summary |
| get_genetox_summary_batch | Get genetox summary batch |
| get_genetox_summary_batch_old | Get genetox summary batch |
| get_hazard_by_dtxsid | Get hazard data by DTXSID |
| get_hazard_by_dtxsid_batch | Get hazard data by DTXSID batch |
| get_hazard_by_dtxsid_batch_old | Get hazard data by DTXSID batch |
| get_hazard_endpoint_status | Hazard API Endpoint status |
| get_human_hazard_by_dtxsid | Get human hazard data by DTXSID |
| get_human_hazard_by_dtxsid_batch | Get human hazard data by DTXSID batch |
| get_human_hazard_by_dtxsid_batch_old | Get human hazard data by DTXSID batch |
| get_inchi | Get InChI |
| get_inchikey | Get InChIKey |
| get_lists_containing_chemical | Get chemical lists containing given chemical |
| get_lists_containing_chemical_batch | Get chemical lists containing given chemical batch |
| get_msready_by_dtxcid | Get msready by DTXCID |
| get_msready_by_dtxcid_batch | Get msready by DTXCID batch search |
| get_msready_by_formula | Get msready by formula |
| get_msready_by_formula_batch | Get msready by formula batch search |
| get_msready_by_mass | Get msready by mass |
| get_msready_by_mass_batch | Get ms ready by mass batch search |
| get_msready_by_mass_with_error_batch | Get msready by mass and error offset |
| get_public_chemical_list_by_name | Get chemical list by name |
| get_public_chemical_list_by_name_batch | Get chemical list by name batch |
| get_skin_eye_hazard | Get skin and eye hazard |
| get_skin_eye_hazard_batch | Get skin and eye hazard batch |
| get_skin_eye_hazard_batch_old | Get skin and eye hazard batch |
| get_smiles | Get Smiles |
-- H --
| has_ctxR_option | ctxR Options |
| has_ctxR_options | ctxR Options |
| has_ctx_key | Register CTX API Key for ctxR |
| hazard_api_server | Hazard API Server url |
-- P --
| prepare_word | Prepare url helper function |
| print.ctx_credentials | Register CTX API Key for ctxR |
-- R --
| register_ctx_api_key | Register CTX API Key for ctxR |
-- S --
| set_ctxR_option | ctxR Options |
| showing_key | Register CTX API Key for ctxR |