Product-Limit Estimation for Censored Event History Analysis

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Documentation for package ‘prodlim’ version 2024.06.25

Help Pages

atRisk Drawing numbers of subjects at-risk of experiencing an event below Kaplan-Meier and Aalen-Johansen plots.
backGround Background and grid color control.
checkCauses Check availability of a cause in competing risk settings
confInt Add point-wise confidence limits to the graphs of Kaplan-Meier and Aalen-Johansen estimates.
crModel Competing risks model for simulation
dimColor Dim a given color to a specified density
EventHistory.frame Event history frame
getEvent Extract a column from an event history object.
getStates States of a multi-state model
head.Hist Check the head of an event history object
Hist Create an event history object
is.na.Hist Check for missing values in event history object
jackknife Compute jackknife pseudo values.
jackknife.competing.risks Compute jackknife pseudo values.
jackknife.survival Compute jackknife pseudo values.
leaveOneOut Compute jackknife pseudo values.
leaveOneOut.competing.risks Compute jackknife pseudo values.
leaveOneOut.survival Compute jackknife pseudo values.
lines.prodlim Plotting event probabilities over time
List2Matrix Reduce list to a matrix or data.frame with names as new columns
markTime Marking product-limit plots at the censored times.
meanNeighbors Helper function to obtain running means for prodlim objects.
model.design Extract a design matrix and specials from a model.frame
neighborhood Nearest neighborhoods for kernel smoothing
parseSpecialNames Parse special terms
PercentAxis Percentage-labeled axis.
plot.Hist Box-arrow diagrams for multi-state models.
plot.prodlim Plotting event probabilities over time
plotCompetingRiskModel Plotting a competing-risk-model.
plotIllnessDeathModel Plotting an illness-death-model.
predict.prodlim Predicting event probabilities from product limit estimates
predictAbsrisk Predicting event probabilities from product limit estimates
predictCuminc Predicting event probabilities from product limit estimates
predictSurv Predicting event probabilities from product limit estimates
predictSurvIndividual Predict individual survival probabilities
print.Hist Print objects in the prodlim library
print.neighborhood Print objects in the prodlim library
print.prodlim Print objects in the prodlim library
prodlim product limit method
quantile.prodlim Quantiles for Kaplan-Meier and Aalen-Johansen estimates.
redist Calculation of Efron's re-distribution to the right algorithm to obtain the Kaplan-Meier estimate.
row.match Identifying rows in a matrix or data.frame
SimCompRisk Simulate competing risks data
SimSurv Simulate survival data
sindex Index for evaluation of step functions.
SmartControl Function to facilitate the control of arguments passed to subroutines.
stopTime Stop the time of an event history object
str.Hist Check the structure of an event history object
strip.terms Strip special functions from terms
subset.Hist Subset an event history object
summary.Hist Summary of event histories
summary.prodlim Summary method for prodlim objects.
survModel Survival model for simulation
tail.Hist Check the tail of an event history object
[.Hist Subset an event history object