AllPairsQuartetAgreement |
Direct entry points to "tqDist" functions |
AllPairsQuartetDistance |
Direct entry points to "tqDist" functions |
AllPairsTripletDistance |
Direct entry points to "tqDist" functions |
AllQuartets |
List all quartets |
AllQuartets.numeric |
List all quartets |
AllQuartets.phylo |
List all quartets |
BipartitionPoints |
Plot tree differences on ternary plots |
BipartitionStatus |
Matching partitions |
CompareBipartitions |
Compare status of splits |
CompareQuartets |
Compare quartet states by explicit enumeration |
CompareQuartetsMulti |
Compare one tree's quartets against others' |
CompareSplits |
Compare status of splits |
Distances |
Direct entry points to "tqDist" functions |
DoNotConflict |
Tree similarity measures |
ExplicitlyAgree |
Tree similarity measures |
ManyToManyQuartetAgreement |
Status of quartets |
MarczewskiSteinhaus |
Tree similarity measures |
OneToManyQuartetAgreement |
Direct entry points to "tqDist" functions |
PairsQuartetDistance |
Direct entry points to "tqDist" functions |
PairsTripletDistance |
Direct entry points to "tqDist" functions |
PlotQuartet |
Plot quartet on tree topologies |
QuartetAgreement |
Direct entry points to "tqDist" functions |
QuartetDistance |
Direct entry points to "tqDist" functions |
QuartetDivergence |
Tree similarity measures |
QuartetPoints |
Plot tree differences on ternary plots |
QuartetState |
Quartet State(s) |
QuartetStates |
Quartet State(s) |
QuartetStates.list |
Quartet State(s) |
QuartetStates.multiPhylo |
Quartet State(s) |
QuartetStates.Splits |
Quartet State(s) |
QuartetStatus |
Status of quartets |
RawSymmetricDifference |
Tree similarity measures |
ResolvedQuartets |
Count resolved quartets |
ResolvedTriplets |
Count resolved quartets |
RobinsonFoulds |
Tree similarity measures |
SemiStrictJointAssertions |
Tree similarity measures |
SharedBipartitionStatus |
Matching partitions |
SharedQuartetStatus |
Status of quartets |
SharedSplitStatus |
Matching partitions |
SimilarityMetrics |
Tree similarity measures |
SimilarityToReference |
Tree similarity measures |
SingleTreeQuartetAgreement |
Status of quartets |
SplitPoints |
Plot tree differences on ternary plots |
SplitStatus |
Matching partitions |
sq_trees |
Eighteen example trees |
SteelPenny |
Tree similarity measures |
StrictJointAssertions |
Tree similarity measures |
SymmetricDifference |
Tree similarity measures |
SymmetricDifferenceLineEnds |
Plot contours of equal symmetric difference on a ternary plot |
SymmetricDifferenceLines |
Plot contours of equal symmetric difference on a ternary plot |
TQAE |
Wrapper for tqDist |
TQDist |
Wrapper for tqDist |
TripletDistance |
Direct entry points to "tqDist" functions |
TwoListQuartetAgreement |
Status of quartets |
VisualizeQuartets |
Visualize quartet difference on trees, by split |