NBLDA-package |
Classifying count data using Poisson/Negative Binomial linear discriminant analysis |
cervical |
Cervical cancer data |
control |
Accessors for the 'control' slot. |
control-method |
Accessors for the 'control' slot. |
FindBestTransform |
Find the Power Transformation Parameter. |
generateCountData |
Generate Count Data |
getShrinkedDispersions |
Estimate Shrinked Overdispersions |
inputs |
Accessors for the 'input' slot. |
inputs-method |
Accessors for the 'input' slot. |
nblda-class |
'nblda' object |
nbldaControl |
Control parameters for trained NBLDA model. |
nbldaTrained |
Accessors for the 'crossValidated' slot. |
nbldaTrained-method |
Accessors for the 'crossValidated' slot. |
nblda_input-class |
'nblda_input' object |
nblda_trained-class |
'nblda_trained' object |
normalization |
Accessors for the 'type' slot. |
normalization-method |
Accessors for the 'type' slot. |
NullModel |
Calculate the Normalized Counts and Related Training Parameters. |
NullModelTest |
Calculate the Normalized Counts and Related Training Parameters. |
plot |
Plot Method for the 'nblda' and 'nblda_trained' Classes |
plot-method |
Plot Method for the 'nblda' and 'nblda_trained' Classes |
plot.nblda |
Plot Method for the 'nblda' and 'nblda_trained' Classes |
plot.nblda_trained |
Plot Method for the 'nblda' and 'nblda_trained' Classes |
predict |
Extract predictions from NBLDA model |
predict-method |
Extract predictions from NBLDA model |
predict.nblda |
Extract predictions from NBLDA model |
selectedFeatures |
Accessors for the 'selectedFeatures' slot. |
selectedFeatures-method |
Accessors for the 'selectedFeatures' slot. |
show |
Show Method for the S4 classes in NBLDA Package |
show-method |
Show Method for the S4 classes in NBLDA Package |
show.nblda |
Show Method for the S4 classes in NBLDA Package |
show.nblda_input |
Show Method for the S4 classes in NBLDA Package |
show.nblda_trained |
Show Method for the S4 classes in NBLDA Package |
trainNBLDA |
Train Model over Different Tuning Parameters |