Negative Binomial Linear Discriminant Analysis

[Up] [Top]

Documentation for package ‘NBLDA’ version 1.0.1

Help Pages

NBLDA-package Classifying count data using Poisson/Negative Binomial linear discriminant analysis
cervical Cervical cancer data
control Accessors for the 'control' slot.
control-method Accessors for the 'control' slot.
FindBestTransform Find the Power Transformation Parameter.
generateCountData Generate Count Data
getShrinkedDispersions Estimate Shrinked Overdispersions
inputs Accessors for the 'input' slot.
inputs-method Accessors for the 'input' slot.
nblda-class 'nblda' object
nbldaControl Control parameters for trained NBLDA model.
nbldaTrained Accessors for the 'crossValidated' slot.
nbldaTrained-method Accessors for the 'crossValidated' slot.
nblda_input-class 'nblda_input' object
nblda_trained-class 'nblda_trained' object
normalization Accessors for the 'type' slot.
normalization-method Accessors for the 'type' slot.
NullModel Calculate the Normalized Counts and Related Training Parameters.
NullModelTest Calculate the Normalized Counts and Related Training Parameters.
plot Plot Method for the 'nblda' and 'nblda_trained' Classes
plot-method Plot Method for the 'nblda' and 'nblda_trained' Classes
plot.nblda Plot Method for the 'nblda' and 'nblda_trained' Classes
plot.nblda_trained Plot Method for the 'nblda' and 'nblda_trained' Classes
predict Extract predictions from NBLDA model
predict-method Extract predictions from NBLDA model
predict.nblda Extract predictions from NBLDA model
selectedFeatures Accessors for the 'selectedFeatures' slot.
selectedFeatures-method Accessors for the 'selectedFeatures' slot.
show Show Method for the S4 classes in NBLDA Package
show-method Show Method for the S4 classes in NBLDA Package
show.nblda Show Method for the S4 classes in NBLDA Package
show.nblda_input Show Method for the S4 classes in NBLDA Package
show.nblda_trained Show Method for the S4 classes in NBLDA Package
trainNBLDA Train Model over Different Tuning Parameters