genio-package |
genio (GENetics I/O): A package for reading and writing genetics data |
count_lines |
Count the number of lines of a file |
delete_files_grm |
Delete all GCTA binary GRM files |
delete_files_phen |
Delete PHEN files |
delete_files_plink |
Delete all Plink binary files |
genio |
genio (GENetics I/O): A package for reading and writing genetics data |
geno_to_char |
Convert a genotype matrix from numeric to character codes |
ind_to_fam |
Convert an Eigenstrat IND tibble into a Plink FAM tibble |
make_bim |
Create a Plink BIM tibble |
make_fam |
Create a Plink FAM tibble |
read_bed |
Read a genotype matrix in Plink BED format |
read_bim |
Read Plink *.bim files |
read_eigenvec |
Read Plink eigenvec file |
read_fam |
Read Plink *.fam files |
read_grm |
Read GCTA GRM and related plink2 binary files |
read_ind |
Read Eigenstrat *.ind files |
read_matrix |
Read a numerical matrix file into an R matrix |
read_phen |
Read *.phen files |
read_plink |
Read genotype and sample data in a Plink BED/BIM/FAM file set. |
read_snp |
Read Eigenstrat *.snp files |
require_files_grm |
Require that GCTA binary GRM files are present |
require_files_phen |
Require that PHEN file is present |
require_files_plink |
Require that Plink binary files are present |
sex_to_char |
Convert integer sex codes to character codes |
sex_to_int |
Convert character sex codes to integer codes |
tidy_kinship |
Create a tidy version of a kinship matrix |
write_bed |
Write a genotype matrix into Plink BED format |
write_bim |
Write Plink *.bim files |
write_eigenvec |
Write eigenvectors table into a Plink-format file |
write_fam |
Write Plink *.fam files |
write_grm |
Write GCTA GRM and related plink2 binary files |
write_ind |
Write Eigenstrat *.ind files |
write_matrix |
Write a matrix to a file without row or column names |
write_phen |
Write *.phen files |
write_plink |
Write genotype and sample data into a Plink BED/BIM/FAM file set. |
write_snp |
Write Eigenstrat *.snp files |