'ADMB' to R Interface Functions

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Documentation for package ‘R2admb’ version 0.7.16.3

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

R2admb-package	ADMB to R interface functions
admb_version	Query ADMB version
AIC.admb	Standard accessor functions for ADMB model fits
clean_admb	Set up AD Model Builder environment variables
coef.admb	Standard accessor functions for ADMB model fits
compile_admb	Compile ADMB files, run, read output
confint.admb	Standard accessor functions for ADMB model fits
dat_write	Write parameter and data files for ADMB
deviance.admb	Standard accessor functions for ADMB model fits
do_admb	Compile and/or run an ADMB model, collect output
extract_gradient	Extract gradients
find_large_cor	Find large correlations
logLik.admb	Standard accessor functions for ADMB model fits
mcmc.control	Control options for MCMC after ADMB fitting
plot.admb_hist	Plot MCMC histogram
print.admb	Standard accessor functions for ADMB model fits
print.summary.admb	Standard accessor functions for ADMB model fits
R2admb	ADMB to R interface functions
read_admb	Compile ADMB files, run, read output
read_pars	Read in parameters from an AD Model Builder run
read_plt	Read in ADMB profile file
read_psv	Read in parameters from an AD Model Builder run
read_rep	Read in parameters from an AD Model Builder run
run.control	set run options for running ADMB via R
run_admb	Compile ADMB files, run, read output
setup_admb	Set up AD Model Builder environment variables
stdEr	Standard accessor functions for ADMB model fits
stdEr.admb	Standard accessor functions for ADMB model fits
summary.admb	Standard accessor functions for ADMB model fits
vcov.admb	Standard accessor functions for ADMB model fits
write_dat	Write parameter and data files for ADMB
write_pin	Write parameter and data files for ADMB