Plot Publication-Grade Gene and Genome Maps

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Documentation for package ‘genoPlotR’ version 0.8.11

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

genoPlotR-package	Plot Publication-Grade Gene and Genome Maps
annotation	Annotation class and class functions
apply_color_scheme	Apply a color scheme
artemisColors	Artemis Colors
as.annotation	Annotation class and class functions
as.comparison	Comparison class and class functions
as.dna_seg	DNA segment (dna_seg) class and class functions
as.seg_plot	seg_plot class and class functions
auto_annotate	Auto-annotate dna_segs
barto	Comparison of 4 Bartonella genomes
bbone	Mauve backbone of 4 Bartonella genomes
c.dna_seg	Concatenate dna_seg objects
chrY_subseg	Comparisons of subsegments of the Y chromosome in human and chimp
comparison	Comparison class and class functions
comparisons	Three genes data set
dna_seg	DNA segment (dna_seg) class and class functions
dna_segs	Three genes data set
gene_types	Gene types
genoPlotR	Plot Publication-Grade Gene and Genome Maps
human_nt	Human-readable nucleotide scale
is.annotation	Annotation class and class functions
is.comparison	Comparison class and class functions
is.dna_seg	DNA segment (dna_seg) class and class functions
is.seg_plot	seg_plot class and class functions
mauve_bbone	Mauve backbone of 4 Bartonella genomes
middle	Middles of a dna_seg
plot_gene_map	Plot gene and genome maps
range.annotation	Range calculation
range.comparison	Range calculation
range.dna_seg	Range calculation
read_comparison_from_blast	Reading functions
read_comparison_from_tab	Reading functions
read_dna_seg_from_embl	Reading functions
read_dna_seg_from_fasta	Reading functions
read_dna_seg_from_file	Reading functions
read_dna_seg_from_genbank	Reading functions
read_dna_seg_from_ptt	Reading functions
read_dna_seg_from_tab	Reading functions
read_functions	Reading functions
read_mauve_backbone	Reading functions
reverse	Reverse objects
reverse.comparison	Reverse objects
reverse.default	Reverse objects
reverse.dna_seg	Reverse objects
seg_plot	seg_plot class and class functions
three_genes	Three genes data set
trim	Trimming data frames or more complex objects with >= 2 numeric columns
trim.annotation	Trimming data frames or more complex objects with >= 2 numeric columns
trim.comparison	Trimming data frames or more complex objects with >= 2 numeric columns
trim.default	Trimming data frames or more complex objects with >= 2 numeric columns
trim.dna_seg	Trimming data frames or more complex objects with >= 2 numeric columns
trim.seg_plot	Trimming data frames or more complex objects with >= 2 numeric columns