genoPlotR-package |
Plot Publication-Grade Gene and Genome Maps |
annotation |
Annotation class and class functions |
apply_color_scheme |
Apply a color scheme |
artemisColors |
Artemis Colors |
as.annotation |
Annotation class and class functions |
as.comparison |
Comparison class and class functions |
as.dna_seg |
DNA segment (dna_seg) class and class functions |
as.seg_plot |
seg_plot class and class functions |
auto_annotate |
Auto-annotate dna_segs |
barto |
Comparison of 4 Bartonella genomes |
bbone |
Mauve backbone of 4 Bartonella genomes |
c.dna_seg |
Concatenate dna_seg objects |
chrY_subseg |
Comparisons of subsegments of the Y chromosome in human and chimp |
comparison |
Comparison class and class functions |
comparisons |
Three genes data set |
dna_seg |
DNA segment (dna_seg) class and class functions |
dna_segs |
Three genes data set |
gene_types |
Gene types |
genoPlotR |
Plot Publication-Grade Gene and Genome Maps |
human_nt |
Human-readable nucleotide scale |
is.annotation |
Annotation class and class functions |
is.comparison |
Comparison class and class functions |
is.dna_seg |
DNA segment (dna_seg) class and class functions |
is.seg_plot |
seg_plot class and class functions |
mauve_bbone |
Mauve backbone of 4 Bartonella genomes |
middle |
Middles of a dna_seg |
plot_gene_map |
Plot gene and genome maps |
range.annotation |
Range calculation |
range.comparison |
Range calculation |
range.dna_seg |
Range calculation |
read_comparison_from_blast |
Reading functions |
read_comparison_from_tab |
Reading functions |
read_dna_seg_from_embl |
Reading functions |
read_dna_seg_from_fasta |
Reading functions |
read_dna_seg_from_file |
Reading functions |
read_dna_seg_from_genbank |
Reading functions |
read_dna_seg_from_ptt |
Reading functions |
read_dna_seg_from_tab |
Reading functions |
read_functions |
Reading functions |
read_mauve_backbone |
Reading functions |
reverse |
Reverse objects |
reverse.comparison |
Reverse objects |
reverse.default |
Reverse objects |
reverse.dna_seg |
Reverse objects |
seg_plot |
seg_plot class and class functions |
three_genes |
Three genes data set |
trim |
Trimming data frames or more complex objects with >= 2 numeric columns |
trim.annotation |
Trimming data frames or more complex objects with >= 2 numeric columns |
trim.comparison |
Trimming data frames or more complex objects with >= 2 numeric columns |
trim.default |
Trimming data frames or more complex objects with >= 2 numeric columns |
trim.dna_seg |
Trimming data frames or more complex objects with >= 2 numeric columns |
trim.seg_plot |
Trimming data frames or more complex objects with >= 2 numeric columns |