Tools for Ordinary Differential Equations Model Fitting

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Documentation for package ‘fitode’ version 0.1.1

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

blowfly	Nicholson's blowfly data
coef-method	Extract model coefficients from fitode objects
coef-method	Extract model coefficients from fitodeMCMC objects
confint-method	Calculate confidence intervals from fitode objects for model parameters and their transformations
confint-method	Calculate credible intervals from fitodeMCMC objects for model parameters and their transformations
fitode	Fit ordinary differential equations model
fitode-class	Class "fitode". Result of ode fitting based on Maximum Likelihood Estimation
fitodeMCMC	Fit ordinary differential equations model using MCMC
fitodeMCMC-class	Class "fitodeMCMC". Result of ode fitting based on Markov Chain Monte Carlo (MCMC)
initialize-method	Constructor method of "odemodel" class
logLik-method	Extract log-likelihood
loglik.ode-class	Class representing log-likelihood models used to fit ode models
plot-method	Plot a fitode object
plot-method	Plot a fitodeMCMC object
plot_internal	Internal function for plotting methods
predict-method	Prediction function for fitode objects
predict-method	Prediction function for fitodeMCMC objects
prior.ode-class	Class representing prior models used to fit ode models
profile-method	Profile fitode objects
SierraLeone2014	Data from 2014 Sierra Leone Ebola epidemic
simulate-method	simulate fitode objects
simulate-method	simulate model objects
simulate_internal	Internal function for simulation models
stdEr-method	Extract standard error from fitode objects
stdEr-method	Extract standard error from fitodeMCMC objects
summary-method	Summarize fitode object
summary-method	Summarize fitodeMCMC object
tumorgrowth	Tumor growth data
update-method	Update fitode fits
update-method	Update fitodeMCMC fits
vcov-method	Extract variance-covariance matrix from fitode objects
vcov-method	Extract variance-covariance matrix from fitodeMCMC objects