blowfly |
Nicholson's blowfly data |
coef-method |
Extract model coefficients from fitode objects |
coef-method |
Extract model coefficients from fitodeMCMC objects |
confint-method |
Calculate confidence intervals from fitode objects for model parameters and their transformations |
confint-method |
Calculate credible intervals from fitodeMCMC objects for model parameters and their transformations |
fitode |
Fit ordinary differential equations model |
fitode-class |
Class "fitode". Result of ode fitting based on Maximum Likelihood Estimation |
fitodeMCMC |
Fit ordinary differential equations model using MCMC |
fitodeMCMC-class |
Class "fitodeMCMC". Result of ode fitting based on Markov Chain Monte Carlo (MCMC) |
initialize-method |
Constructor method of "odemodel" class |
logLik-method |
Extract log-likelihood |
loglik.ode-class |
Class representing log-likelihood models used to fit ode models |
plot-method |
Plot a fitode object |
plot-method |
Plot a fitodeMCMC object |
plot_internal |
Internal function for plotting methods |
predict-method |
Prediction function for fitode objects |
predict-method |
Prediction function for fitodeMCMC objects |
prior.ode-class |
Class representing prior models used to fit ode models |
profile-method |
Profile fitode objects |
SierraLeone2014 |
Data from 2014 Sierra Leone Ebola epidemic |
simulate-method |
simulate fitode objects |
simulate-method |
simulate model objects |
simulate_internal |
Internal function for simulation models |
stdEr-method |
Extract standard error from fitode objects |
stdEr-method |
Extract standard error from fitodeMCMC objects |
summary-method |
Summarize fitode object |
summary-method |
Summarize fitodeMCMC object |
tumorgrowth |
Tumor growth data |
update-method |
Update fitode fits |
update-method |
Update fitodeMCMC fits |
vcov-method |
Extract variance-covariance matrix from fitode objects |
vcov-method |
Extract variance-covariance matrix from fitodeMCMC objects |