R: Plot MCMC Juxtaposition

plot.juxtapose {LaplacesDemon}

R Documentation

Plot MCMC Juxtaposition

Description

This may be used to plot a juxtaposition of MCMC algorithms according either to IAT or ISM (Independent Samples per Minute).

Usage

## S3 method for class 'juxtapose'
plot(x, Style="ISM", ...)

Arguments

`x`	This required argument is an object of class `juxtapose`.
`Style`	This argument accepts either `IAT` or `ISM`, and defaults to `ISM`.
`...`	Additional arguments are unused.

Details

When Style="IAT", the medians and 95% probability intervals of the integrated autocorrelation times (IATs) of MCMC algorithms are displayed in a caterpillar plot. The best, or least inefficient, MCMC algorithm is the algorithm with the lowest IAT.

When Style="ISM", the medians and 95% probability intervals of the numbers of independent samples per minute (ISM) of MCMC algorithms are displayed in a caterpillar plot. The best, or least inefficient, MCMC algorithm is the algorithm with the highest ISM.

For more information, see the Juxtapose function.

Author(s)