SCRIPsimLibSizes {SCRIP}R Documentation

Simulate library sizes

Description

Simulate expected library sizes. Typically a log-normal distribution is used but there is also the option to use a normal distribution. In this case any negative values are set to half the minimum non-zero value.

Usage

SCRIPsimLibSizes(sim, params, libsize)

Arguments

sim

SingleCellExperiment to add library size to.

params

SplatParams object with simulation parameters.

libsize

Provide the library size directly instread of using parameters to estimate

Value

SingleCellExperiment with simulated library sizes.


[Package SCRIP version 1.0.0 Index]