MVP.Data.impute {rMVP}

MVP.Data.impute: To impute the missing genotype Author: Haohao Zhang Build date: Sep 12, 2018

Description

MVP.Data.impute: To impute the missing genotype Author: Haohao Zhang Build date: Sep 12, 2018

Usage

MVP.Data.impute(
  mvp_prefix,
  out = NULL,
  method = "Major",
  ncpus = NULL,
  verbose = TRUE
)

Arguments

mvp_prefix

the prefix of mvp file

out

the prefix of output file

method

'Major', 'Minor', "Middle"

ncpus

number of threads for imputing

verbose

whether to print the reminder

Value

NULL Output files: imputed genotype file

Examples

mvpPath <- file.path(system.file("extdata", "05_mvp", package = "rMVP"), "mvp")

MVP.Data.impute(mvpPath, tempfile("outfile"), ncpus=1)