MVP.K.VanRaden {rMVP}

Calculate Kinship matrix by VanRaden method

Description

Build date: Dec 12, 2016 Last update: Dec 12, 2019

Usage

MVP.K.VanRaden(M, priority = c("speed", "memory"), cpu = 1, verbose = TRUE)

Arguments

M

Genotype, m * n, m is marker size, n is population size

priority

speed or memory

cpu

the number of cpu

verbose

whether to print detail.

Value

K, n * n matrix

Examples

genoPath <- system.file("extdata", "06_mvp-impute", "mvp.imp.geno.desc", package = "rMVP")
genotype <- attach.big.matrix(genoPath)
print(dim(genotype))

K <- MVP.K.VanRaden(genotype, cpu=1)