MVP.FaSTLMM.LL {rMVP}

Evaluation of the maximum likelihood using FaST-LMM method

Description

Last update: January 11, 2017

Usage

MVP.FaSTLMM.LL(pheno, snp.pool, X0 = NULL, ncpus = 2)

Arguments

pheno

a two-column phenotype matrix

snp.pool

matrix for pseudo QTNs

X0

covariates matrix

ncpus

number of threads used for parallel computation

Value

Output: beta - beta effect Output: delta - delta value Output: LL - log-likelihood Output: vg - genetic variance Output: ve - residual variance

Author(s)

Xiaolei Liu (modified)