scdat {tcpl}

A subset of ToxCast data showing changes in transcription factor activity for multiple targets.

Description

The example dataset is used to illustrate how the user can pipeline single-concentration data from chemical screening using tcplLite.

Usage

scdat

Format

A data frame with 320 rows and 10 variables:

spid

sample ID

apid

assay plate ID

rowi

well-plate row number (N/A)

coli

well-plate column number (N/A)

wllt

well type (N/A)

wllq

well quality (N/A)

conc

concentration in micromolar

rval

raw assay component readout value

srcf

source file containing the data

acsn

assay component source name

Source

ToxCast database