| sc_vignette {tcpl} | R Documentation |
List with single-concentration data for the vignette
Description
This dataset is a list with 3 data.tables (sc0,sc1,sc2).
Usage
sc_vignette
Format
-
sc0 A data frame with 10 rows and 18 columns containing level 0 formatted raw data.
- spid
Sample ID
- chid
Unique chemical ID number for tcpl
- casn
Chemical Abstract Service(CAS) number
- chnm
Chemical name
- dsstox_substance_id
Chemical-specific DTXSID
- code
CAS number compressed into numeric string
- acid
Assay Component ID
- acnm
Assay Component Name
- s0id
Level 0 (sc0) ID
- apid
Assay plate ID
- rowi
Row Index
- coli
Column Index
- wllt
Well Type
- wllq
Well Quality (0 or 1)
- conc
Concentration in micromolar
- rval
Raw assay component readout value
- srcf
Source file containing the raw data
- conc_unit
Concentration Units
-
sc1 A data frame with 10 rows and 20 columns containing level 1 normalized data.
- spid
Sample ID
- chid
Unique chemical ID number for tcpl
- casn
Chemical Abstract Service(CAS) number
- chnm
Chemical name
- dsstox_substance_id
Chemical-specific DTXSID
- code
CAS number compressed into numeric string
- aeid
Assay Component Endpoint ID
- aenm
Assay endpoint name (i.e., assay_component_endpoint_name)
- acid
Assay Component ID
- acnm
Assay Component Name
- s0id
Level 0 (sc0) ID
- s1id
Level 1 (sc1) ID
- apid
Assay plate ID
- rowi
Row Index
- coli
Column Index
- wllt
Well Type
- logc
Log base 10 concentration
- resp
Normalized response value
- resp_unit
Response Units
- conc_unit
Concentration Units
-
sc2 A data frame with 10 rows and 15 columns containing level 2 efficacy/hit designation data.
- spid
Sample ID
- chid
Unique chemical ID number for tcpl
- casn
Chemical Abstract Service(CAS) number
- chnm
Chemical name
- dsstox_substance_id
Chemical-specific DTXSID
- code
CAS number compressed into numeric string
- aeid
Assay Component Endpoint ID
- aenm
Assay endpoint name (i.e., assay_component_endpoint_name)
- s2id
Level 2 (sc2) ID
- bmad
The median absolute deviation of all treatment wells (default option) or blank wells
- max_med
Maximum median response
- hitc
Hitcall
- coff
Cutoff
- resp_unit
Response Units
- conc_unit
Concentration Units