runOntoFast {ontoFAST} | R Documentation |
Run ontoFAST interactively
Description
This function runs ontoFAST in interactive mode. Interactive mode allows character annotation and navigation through ontology network.
Usage
runOntoFast(
is_a = c("is_a"),
part_of = c("BFO:0000050"),
nchar = "all",
show.chars = TRUE,
shiny_in = "shiny_in",
file2save = "OntoFAST_shiny_in.RData",
...
)
Arguments
is_a |
term for is_a relationships |
part_of |
term for part_of relationships |
nchar |
number of characters to show |
show.chars |
shows character statements |
shiny_in |
a name of ontology (shiny_in) object in "ontofast" enviroment |
file2save |
a name of the file to which shiny_in object is saved in interactive mode |
... |
other arguments |
Value
runs ontoFAST interactively using Shiny.
Examples
data(Sharkey_2011)
data(HAO)
hao_obo<-onto_process(HAO, Sharkey_2011[,1], do.annot = FALSE)
ontofast <- new.env(parent = emptyenv())
ontofast$shiny_in <- make_shiny_in(hao_obo)
runOntoFast(is_a = c("is_a"), part_of = c("BFO:0000050"), shiny_in="shiny_in" )
[Package ontoFAST version 1.0.0 Index]